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2014-04-26Enable selection of observed variables to plotJohannes Ranke2-22/+31
2014-04-25McCall 2,4,5-T dataset, lower bound for transform_rates=FALSEJohannes Ranke7-6/+52
2014-04-22Possibility to fit without parameter transformationJohannes Ranke6-35/+98
2014-03-24Source of gWidgetsWWW2 package to comply with CRAN policyJohannes Ranke1-1/+3
2014-03-21Small variation to last commit, in reality fixes #2Johannes Ranke1-1/+1
2014-03-21Update interval variabel list on saving a dataset, fixes #1Johannes Ranke1-0/+1
2014-03-21Fix markup of mkin acronym explanation (hopefully)Johannes Ranke1-4/+4
2014-03-20Add copyright information and bugreport URLJohannes Ranke1-3/+5
2014-02-28Include ideas about extJS into TODOJohannes Ranke1-0/+2
2014-02-27Format of gmkin workspace files, copyright, updatesJohannes Ranke11-39/+133
- Change the format of the workspace files of gmkin so they can be distributed in the mkin package - Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - Restrict the unit test with the Schaefer data to parent and primary metabolites as formation fraction and DT50 for A2 are higly correlated and passing the test is platform dependent. For example, the test fails in 1 out of 14 platforms on CRAN as of today - Add Eurofins Regulatory AG copyright notices - Import FME and deSolve instead of depending on them to have cleaner startup
2014-01-22Merge branch 'master' of https://github.com/jranke/mkinJohannes Ranke9-34/+61
Conflicts: DESCRIPTION R/mkinfit.R
2014-01-17- Use mkinmod$spec instead of mkinmod$map wherever possible, in order to ↵Johannes Ranke2-5/+5
make it possible to to modify mkinmod$map when the mapping of internal to observed variables should be changed. Note that such modifications will confuse plot.mkinfit and summary.mkinfit. Setting the class attribute to modFit makes summary.modFit useable in such a case
2013-12-04Make it possible to use different ode solvers=5-16/+47
2013-12-04Update ChangeLog and DESCRIPTIONJohannes Ranke2-3/+6
2013-12-04Make clear in help file that gmkin is experimentalJohannes Ranke1-0/+3
2013-12-04Add Makefile targets without vignette buildingJohannes Ranke1-8/+9
2013-12-04Remove mkinmod warning based on a misconceptionJohannes Ranke1-13/+2
2013-11-18Add GUI start function, keep GUI here in mkinJohannes Ranke7-8/+38
2013-11-17Merge branch 'r-forge'Johannes Ranke0-0/+0
2013-11-17Squashed commit of the following:jranke1-2/+0
commit f865119e13ac52d59d4a9850bff3804baeb887a7 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Sun Nov 17 21:11:08 2013 +0100 Update of the TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@165 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-17Update of the TODOJohannes Ranke1-2/+0
2013-11-17Merge branch 'master' into r-forgejranke2-7/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@164 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-17Conflicts:jranke39-724/+1599
README.md TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@163 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-17Change vignette format to knitr (see ChangeLog)Johannes Ranke39-727/+1595
2013-11-13Squashed commit of the following:jranke4-11/+56
commit d8dbf2ad866fb9d34cd1100000b9c116219ecef6 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 22:09:41 2013 +0100 Add possibility to control more mkinfit arguments from the GUI commit 8f1bae2142b37a0ff6b8989b2d1569686937f68e Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 20:30:11 2013 +0100 Add initial weighting choice to GUI commit c99b5c298713a7c14e8ab5604c68613d0b7af27a Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 16:25:31 2013 +0100 Update of TODO from git bash on Windows commit 8bf2a6f8f6bd752433f06b26b5da334e958f5166 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 16:00:01 2013 +0100 Update of README using TortoiseGit git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@162 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-13Add possibility to control more mkinfit arguments from the GUIJohannes Ranke2-7/+40
2013-11-13Add initial weighting choice to GUIJohannes Ranke1-3/+16
2013-11-13Update of TODO from git bash on WindowsJohannes Ranke1-2/+2
2013-11-13Update of README using TortoiseGitJohannes Ranke1-5/+4
2013-11-12Merge branch 'master' into r-forgejranke1-0/+7
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@161 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-12Added Contributions section to READMEJohannes Ranke1-0/+7
2013-11-12Merge branch 'master' into r-forgejranke1-16/+23
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@160 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-12More history in the READMEJohannes Ranke1-12/+22
2013-11-12Merged README work from master branchjranke1-1/+50
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@159 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-12Some more work on the READMEJohannes Ranke1-12/+17
2013-11-12Add the feature section to the READMEJohannes Ranke1-1/+42
2013-11-12Squashed commit of the following:jranke1-0/+59
commit 66766071b638ef892a8f54741806c302c7b3ff94 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Tue Nov 12 01:28:30 2013 +0100 Fixed link and improved text of the github README commit 64e1da1517abd57936bc8bd7410bb0c43c6b2a0a Author: Johannes Ranke <jranke@uni-bremen.de> Date: Tue Nov 12 01:20:20 2013 +0100 Some more meat to the README git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@158 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-12Fixed link and improved text of the github READMEJohannes Ranke1-15/+17
2013-11-12Some more meat to the READMEJohannes Ranke1-0/+57
2013-11-11Update with README from githubjranke1-0/+5
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@157 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Vignettes are not built from the makefilejranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@156 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Change quotes to single as backquotes execute automaticallyjranke1-3/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@155 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Fix quotes in makefilejranke1-3/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@154 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Test a git commit while svn not up to datejranke1-0/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@153 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Remove vignette PDFs to have them rebuilt on every buildjranke2-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@152 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Adapt the makefile to presumed git workflowjranke1-2/+4
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@151 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11- Add a simple makefilejranke4-9/+63
- Add a .Rbuildignore file - Clean up unit tests a bit - Test the gwidgets notebook from the knitr demo git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@150 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-09GUI: Fixed a bug that occurred when deleting the last fit from the fit listjranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@149 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-07- Added additional plots, including residual plotsjranke1-7/+75
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@148 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06GUI:jranke1-19/+30
- Uploading of text files works - The current summary is always shown git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@144 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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