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2013-10-10- Added a ChangeLogjranke4-16/+66
- Do not use time zero values of 0 for chi2 error level calculations (see changelog) - Show weighting method in summary - Correct the output of the data in the case of manual weights - Some reformatting in mkinfit.R - GUI: First attempt at representing a fit in the GUI git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@108 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-08- Added the possibility to specify the observed variable in mkinmod in a ↵jranke4-18/+141
checklist - Added the spec list the the mkinmod objects - It seems that the GUI model editor is fully functional - Version bump due to the changes in the mkinmod function arguments, thought they are backward compatible git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@107 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-07- Added a list of models to select fromjranke2-14/+64
- Started the model editor - Added two session files used for testing git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@106 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-07It seems that study and dataset handling now works as desired.jranke1-20/+21
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@105 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-05- There was not really a bug, only the page load takes long using FF on Linuxjranke2-28/+37
- Switching datasets now works fast and seems to be reliable - Moved the save changes button to a new line after the forms - Took out some ggroups that were not necessary any more - The study selector in the dataset editor is now renewed when the dataframe with the studies is edited git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@104 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-04Switching datasets is much quicker now, but somehow I introduced a bug that jranke1-47/+33
makes the Javascript engine throw an error.. And updating the study selector box in the dataset editor does not work at the moment. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@103 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-04Start to change the dataset editor head from glayout to gformlayout, hoping ↵jranke1-23/+26
that this will make it possible to manipulate the gedit instances from within a function. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@102 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-03Just a small bugfix, took me a while to find this, to have a working versionjranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@101 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-02Saving, editing and reloading of datasets now works.jranke2-41/+125
New TODO item is handling the observed variables correctly, and generating an empty grid git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@100 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-01- Remove mkin GUI project files, as they can be a source of error during ↵jranke4-17/+24
development - Make the index to the dataset list ds a character, in order to be able to count the entries correctly after deleting an entry - Make the dataset switcher a handler only for the click event, as otherwise it was called by the assignment of the new data to the gtable widget git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@98 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-25- Fixed the NOTES listed by R CMD checkjranke4-17/+26
Candidate for publication on CRAN git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@97 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-14Started a TODO listjranke1-0/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@96 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-14Now the titles of the datasets can be edited. jranke1-37/+51
Saving and reloading datasets is not implemented yet git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@95 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-14- Selection of datasets for editing now worksjranke1-38/+48
- Button for saving dataset changes introduced git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@94 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-13A little more progressjranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@93 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-13Add and update a study combobox in the dataset editorjranke1-19/+39
Various other small things git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@92 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-13Just resolved a small conflict caused by a local change before updatingjranke2-3/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@91 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-06Start a dataset editorjranke3-5/+81
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@90 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-05Clean up the GUI directory, the old stuff does not really help a lotjranke15-279/+58
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@89 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-05Saving the contents of the data frame with the observed variable names and ↵jranke7-17/+59
reloading works in simple3.R git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@88 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-04git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@87 ↵jranke3-0/+82
edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-07-31Add a test script for trying out the shiny way to build R GUIs.jranke1-0/+4
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@86 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-06-28A bit of experimentation with shinyjranke2-0/+23
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@85 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-06-18Start of new versionjranke1-2/+2
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@84 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-06-18Pending check-in of stuff started at east one month ago:jranke2-2/+5
- avoid returning factors in the data frame in mkin_wide_to_long - stop returning useless results with eigenvalue based solutions when observed absolute values are all very small - better test case for schaefer97 data making use of stepwise fitting - but the solution obtained in one step is better... git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@83 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-04-14- Update the TODO list, setting some requirements for version 1.0jranke11-52/+92
- Check that initial values specified using parms.ini are actually needed for the model, stop otherwise - List all formation fractions in the same place in the summary, also if they were fitted in the model - Include an FOMC model coupled to two metabolites in the unit tests - Some updates needed because of the above - Update of static documentation including the vignettes - Update of the mkin vignettes in the vignettes directory git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@82 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-04-12Remove unnecessary.Rhistory file, as R CMD check gives a NOTE about it.jranke1-3/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@81 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-04-08Update of todo and added linkjranke1-0/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@80 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-04-05Update of the TODO listjranke1-1/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@79 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-15Forgot to update the date in the last commitjranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@78 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-15Add the solution type used in the fit to the summaryjranke2-1/+5
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@77 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-12Improve formatting of data in print.summary.mkinfit()jranke2-3/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@76 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-05Update of vignettes and static HTML documentationjranke2-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@75 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-05- Calculate confidence intervals for parameters based on the t distributionjranke7-91/+134
Thanks to the CAKE developers at Tessella for the call to qt() - Calculate asymetric confidence intervals for backtransformed parameters - Overhaul and recompile vignettes git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@74 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-04Small updates of two mkin help filesjranke2-2/+2
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@73 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-04Introduce the possibility to place the legend with mkin using arguments lpos ↵jranke3-5/+12
and inset git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@72 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-21Make the use of globalVariable() conditional on R Version >= 2.15.1,jranke6-6/+9
in order to make mkin build on such R versions again. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@70 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-18- Completion of the multicompartment part of the mkin examples vignettejranke11-88/+100
- Fix to chi2 error level calculation by correctly returning backtransformed parameters as bparms.optim and bparms.fixed - Adaptations of unit tests, summary and plot functions git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@67 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-18- Some more work on the vignettejranke2-31/+47
- Don't plot a main title in mkinresplot git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@66 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-18More work on the examples vignettejranke4-11/+207
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@65 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-18- Fix the line types in plot.mkinfit again.jranke2-2/+4
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@64 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-17- Removed vignette files that are built during generationjranke22-25660/+0
- Updated the staticdoc documentation git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@63 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-17- Added the examples vignette to the kinfit packagejranke8-10/+52
- Added calls to utils::globalVariables to make R CMD check pass cleanly without NOTES git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@62 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-16- Some maintenance fixesjranke30-11/+2059
- Start of the examples vignette git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@61 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-05- Prevent wrong association of colors and linetypes in plots during mkinfit ↵jranke2-8/+9
operation - Make solid lines the default in such plots, as in plot.mkinfit git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@60 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-12-13Small formatting improvementsjranke1-5/+8
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@59 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-11-26- Added an S3 plot method for mkinfit modelsjranke6-70/+123
- Fixed a bug in the mkinfit summary method which crashed on missing covariance matrices git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@58 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-09-20Some updates of the mkin vignettejranke4-70/+90
Added the kinfit vignette file to the repository git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@57 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-08-02One more TODO item based on a comment by Marie Laure Delignette-Mullerjranke1-0/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@54 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-08-02Better wording in the TODO listjranke1-2/+2
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@53 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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