From 08465aaf96f1d84e345194f0bead2867de352730 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Fri, 6 Nov 2015 14:04:19 +0100
Subject: Add docs for the gmkinws generator and the UBA_model_gallery

---
 man/UBA_model_gallery.Rd | 31 +++++++++++++++++++++++++++++++
 man/gmkinws.Rd           | 23 +++++++++++++++++++++++
 2 files changed, 54 insertions(+)
 create mode 100644 man/UBA_model_gallery.Rd
 create mode 100644 man/gmkinws.Rd

diff --git a/man/UBA_model_gallery.Rd b/man/UBA_model_gallery.Rd
new file mode 100644
index 0000000..619b6bc
--- /dev/null
+++ b/man/UBA_model_gallery.Rd
@@ -0,0 +1,31 @@
+\name{UBA_model_gallery}
+\alias{UBA_model_gallery}
+\docType{data}
+\title{
+  A collection of some standard kinetic models
+}
+\description{
+  The UBA model gallery contains predefined kinetic models for some common use
+  cases, with metabolites named as in the commonly used PELMO degradation
+  scheme (Jene 1998).  Please use the model gallery of the \code{\link{gmkin}}
+  GUI to see their definitions.  The models use the topology of the models
+  defined by Michael Klein (2010) for DegKinManager, with the exception of the
+  kinetic sorption model.
+}
+\usage{data("UBA_model_gallery")}
+\format{
+  A list containing 9 lists of four \code{\link{mkinmod}} models.
+}
+\references{
+  Klein M (2010) Calculation of rates constants according to FOCUS degradation
+  kinetics using DegKinManager and ModelMaker. Project report of UBA project
+  FKZ 360 03 048
+
+  Jene B (1998) PELMO 3.00 Manual extension, Staatliche Lehr- und
+  Forschungsanstalt für Landwirtschaft, Weinbau und Gartenbau, D-67435
+  Neustadt/Wstr.
+}
+\examples{
+data(UBA_model_gallery)
+}
+\keyword{datasets}
diff --git a/man/gmkinws.Rd b/man/gmkinws.Rd
new file mode 100644
index 0000000..5fab955
--- /dev/null
+++ b/man/gmkinws.Rd
@@ -0,0 +1,23 @@
+\docType{class}
+\name{gmkinws}
+\alias{gmkinws}
+\title{A workspace class for gmkin}
+\format{An \code{\link{R6Class}} generator object.}
+\usage{
+gmkinws
+}
+\description{
+Datasets, models and fits are stored in lists.
+}
+\section{Fields}{
+
+\describe{
+\item{\code{observed}}{Names of the observed variables in the datasets, named
+by the names used in the models contained in field m}
+
+\item{\code{ds}}{A list of datasets compatible with mkinfit (long format)}
+
+\item{\code{m}}{A list of mkinmod models}
+
+\item{\code{f}}{A list of mkinfit objects}
+}}
-- 
cgit v1.2.1