From 6ac5441b02f6efebb3e6df81559c818b36841521 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 29 Apr 2014 17:06:47 +0200 Subject: Reformat McCall data to have one Rd file per object --- data/mccall81_245T.RData | Bin 0 -> 759 bytes data/mccall81_245T_soil_metabolism.RData | Bin 786 -> 0 bytes man/mccall81_245T.Rd | 42 +++++++++++++++++++++++++++++++ man/mccall81_245T_soil_metabolism.Rd | 35 -------------------------- 4 files changed, 42 insertions(+), 35 deletions(-) create mode 100644 data/mccall81_245T.RData delete mode 100644 data/mccall81_245T_soil_metabolism.RData create mode 100644 man/mccall81_245T.Rd delete mode 100644 man/mccall81_245T_soil_metabolism.Rd diff --git a/data/mccall81_245T.RData b/data/mccall81_245T.RData new file mode 100644 index 0000000..530d83b Binary files /dev/null and b/data/mccall81_245T.RData differ diff --git a/data/mccall81_245T_soil_metabolism.RData b/data/mccall81_245T_soil_metabolism.RData deleted file mode 100644 index 1e6efa7..0000000 Binary files a/data/mccall81_245T_soil_metabolism.RData and /dev/null differ diff --git a/man/mccall81_245T.Rd b/man/mccall81_245T.Rd new file mode 100644 index 0000000..6c1a137 --- /dev/null +++ b/man/mccall81_245T.Rd @@ -0,0 +1,42 @@ +\name{mccall81_245T} +\alias{mccall81_245T} +\docType{data} +\title{ + Datasets on aerobic soil metabolism of 2,4,5-T in six soils +} +\description{ + Time course of 2,4,5-trichlorophenoxyacetic acid, and the corresponding + 2,4,5-trichlorophenol and 2,4,5-trichloroanisole as recovered in diethylether + extracts. +} +\usage{mccall81_245T} +\format{ + A dataframe containing the following variables. + \describe{ + \item{\code{name}}{the name of the compound observed. Note that T245 is used as + an acronym for 2,4,5-T. T245 is a legitimate object name + in R, which is necessary for specifying models using + \code{\link{mkinmod}}.} + \item{\code{time}}{a numeric vector containing sampling times in days after + treatment} + \item{\code{value}}{a numeric vector containing concentrations in percent of applied radioactivity} + \item{\code{soil}}{a factor containing the name of the soil} + } +} +\source{ + McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labeled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107 + \url{http://dx.doi.org/10.1021/jf00103a026} +} +\examples{ + SFO_SFO_SFO <- mkinmod(T245 = list(type = "SFO", to = "phenol"), + phenol = list(type = "SFO", to = "anisole"), + anisole = list(type = "SFO")) + \dontrun{fit.1 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce")) + summary(fit.1, data = FALSE)} + # No covariance matrix and k_phenol_sink is really small, therefore fix it to zero + fit.2 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"), + parms.ini = c(k_phenol_sink = 0), + fixed_parms = "k_phenol_sink") + summary(fit.2, data = FALSE) +} +\keyword{datasets} diff --git a/man/mccall81_245T_soil_metabolism.Rd b/man/mccall81_245T_soil_metabolism.Rd deleted file mode 100644 index 2ccc23d..0000000 --- a/man/mccall81_245T_soil_metabolism.Rd +++ /dev/null @@ -1,35 +0,0 @@ -\name{mccall81_245T_soil_metabolism} -\Rdversion{1.1} -\alias{commerce} -\alias{catlin} -\alias{fargo} -\alias{keith} -\alias{walla_walla} -\alias{cecil} -\docType{data} -\title{ - Datasets on aerobic soil metabolism of 2,4,5-T in six soils -} -\description{ - Time course of 2,4,5-trichlorophenoxyacetic acid, and the corresponding 2,4,5-trichlorophenol and - 2,4,5-trichloroanisole as recovered in diethylether extracts. -} -\usage{mccall81_245T_soil_metabolism} -\format{ - 6 dataframes containing the following variables. - \describe{ - \item{\code{name}}{the name of the compound observed. Note that T245 is used as an acronym for 2,4,5-T. T245 is - a legitimate object name in R, which is necessary for - specifying models using \code{\link{mkinmod}}.} - \item{\code{time}}{a numeric vector containing sampling times in days after treatment} - \item{\code{value}}{a numeric vector containing concentrations in percent of applied radioactivity} - } -} -\source{ - McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labeled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107 - \url{http://dx.doi.org/10.1021/jf00103a026} -} -\examples{ - commerce -} -\keyword{datasets} -- cgit v1.2.1