From 82eb7a1905304206b18bf295614cbcb44ab138f9 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 17 Jul 2014 07:01:12 +0200 Subject: The ChangeLog was from mkin and is not used any more --- ChangeLog | 70 --------------------------------------------------------------- 1 file changed, 70 deletions(-) delete mode 100644 ChangeLog diff --git a/ChangeLog b/ChangeLog deleted file mode 100644 index 70ba083..0000000 --- a/ChangeLog +++ /dev/null @@ -1,70 +0,0 @@ -2014-05-07 Johannes Ranke for gmkin (0.5-01) - - * Remove all content that does not belong to the newly established - GUI package gmkin - * Update DESCRIPTION, README.md, NAMESPACE, GNUmakefile - * Update R/gmkin.R and inst/GUI/gmkin.R - * Move inst/GUI/TODO to TODO - -2014-04-28 Johannes Ranke for mkin (0.9-26) - - * DESCRIPTION: Added copyright information and location of gWidgetsWWW2 - * Possibility to fit without parameter transformation - * Add McCall 2,4,5-T dataset - * Enable selection of observed variables in plotting - * Add possibility to show residual plot in plot.mkinfit - * gmkin: New layout for plotting and fitting - * gmkin: Only use png plots, remove SVGTipsDevice from DESCRIPTION - * gmkin: Introduce plotting options allowing to select plotted variables - -2014-02-27 Johannes Ranke for mkin (0.9-25) - - * Change vignette format from Sweave to knitr - * Split examples vignette to FOCUS_L and FOCUS_Z - * Remove warning about constant formation fractions in mkinmod - as it was based on a misconception - * Restrict the unit test with the Schaefer data to parent and primary - metabolites as formation fraction and DT50 for A2 are higly correlated and - passing the test is platform dependent. For example, the test fails in 1 - out of 14 platforms on CRAN as of today. - * Add Eurofins Regulatory AG copyright notices - * Import FME and deSolve instead of depending on them to have clean startup - * Add a starter function for the GUI: gmkin() - * Change the format of the workspace files of gmkin so they can be - distributed and documented in the package - * Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - -2013-11-06 Johannes Ranke for mkin (0.9-24) - - * Bugfix re-enabling the fixing of any combination of initial values - for state variables - * Default values for kinetic rate constants are not all 0.1 any more - but are "salted" with a small increment to avoid numeric artefacts - with the eigenvalue based solutions - -2013-10-30 Johannes Ranke for mkin (0.9-23) - - * Backtransform fixed ODE parameters for the summary - -2013-10-21 Johannes Ranke for mkin (0.9-22) - - * Get rid of the optimisation step in mkinerrmin - this was unnecessary - Thanks to KinGUII for the inspiration - actually this is equation 6-2 - in FOCUS kinetics p. 91 that I had overlooked originally - * Fix plot.mkinfit as it passed graphical arguments like main to the solver - * Do not use plot=TRUE in mkinfit example - * The first successful fits in the not so simple GUI - * Fix iteratively reweighted least squares for the case of many metabolites - * Unify naming of initial values of state variables - * Unify naming in dataframes of optimised and fixed parameters in the summary - * Show the weighting method for residuals in the summary - * Correct the output of the data in the case of manual weighting - * Implement IRLS assuming different variances for observed variables - * Do not use 0 values at time zero for chi2 error level calculations. - This is the way it is done in KinGUII and it makes sense. It does - impact the chi2 error levels in the output. Generally they seem to be - lower for metabolites now, presumably because the mean of the observed - values is higher - -Changes performed in earlier versions are documented in the subversion log -files on R-Forge http://www.r-forge.r-project.org/scm/?group_id=615 -- cgit v1.2.1