From 30cbb4092f6d2d3beff5800603374a0d009ad770 Mon Sep 17 00:00:00 2001
From: jranke <jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>
Date: Tue, 11 May 2010 23:03:37 +0000
Subject: Initial upload of the upcoming multicompartment version of kinfit.
 Some functionality is still missing (chi2), some may never be implemented
 (FOMC model), but in general it is much more powerful than kinfit, owing to
 the powerful FME package.

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@8 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
---
 inst/unitTests/Makefile        | 15 ++++++++++++
 inst/unitTests/runit.mkinmod.R | 53 ++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 68 insertions(+)
 create mode 100644 inst/unitTests/Makefile
 create mode 100644 inst/unitTests/runit.mkinmod.R

(limited to 'inst/unitTests')

diff --git a/inst/unitTests/Makefile b/inst/unitTests/Makefile
new file mode 100644
index 0000000..8d13225
--- /dev/null
+++ b/inst/unitTests/Makefile
@@ -0,0 +1,15 @@
+TOP=../..
+PKG=${shell cd ${TOP};pwd}
+SUITE=doRUnit.R
+R=R
+
+all: inst test
+
+inst: # Install package
+	cd ${TOP}/..;\
+	${R} CMD INSTALL ${PKG}
+
+test: # Run unit tests
+	export RCMDCHECK=FALSE;\
+	cd ${TOP}/tests;\
+	${R} --vanilla --slave < ${SUITE}
diff --git a/inst/unitTests/runit.mkinmod.R b/inst/unitTests/runit.mkinmod.R
new file mode 100644
index 0000000..b6ca6b8
--- /dev/null
+++ b/inst/unitTests/runit.mkinmod.R
@@ -0,0 +1,53 @@
+test.mkinmod.SFO <- function()
+{  
+  SFO.diffs <- c(
+    parent = "d_parent = - k_parent_sink * parent"
+  )
+  SFO.parms <- c("k_parent_sink")
+  SFO.map <- list(parent = "parent")
+  SFO <- list(diffs = SFO.diffs, parms = SFO.parms, map = SFO.map)
+  class(SFO) <- "mkinmod"
+  SFO.mkinmod <- mkinmod(spec = list(
+    parent = list(type = "SFO", to = NA, sink=TRUE))
+  )
+  checkIdentical(SFO, SFO.mkinmod)
+}
+
+test.mkinmod.SFORB <- function()
+{  
+  SFORB.diffs <- c(
+    parent_free = paste(
+      "d_parent_free = - k_parent_free_sink * parent_free", 
+        "- k_parent_free_bound * parent_free",
+        "+ k_parent_bound_free * parent_bound"),
+    parent_bound = paste(
+      "d_parent_bound =",
+        "+ k_parent_free_bound * parent_free",
+        "- k_parent_bound_free * parent_bound")
+  )
+  SFORB.parms <- c("k_parent_free_sink", "k_parent_free_bound", "k_parent_bound_free")
+  SFORB.map <- list(parent = c("parent_free", "parent_bound"))
+  SFORB <- list(diffs = SFORB.diffs, parms = SFORB.parms, map = SFORB.map)
+  class(SFORB) <- "mkinmod"
+  SFORB.mkinmod <- mkinmod(spec = list(
+    parent = list(type = "SFORB", to = NA, sink=TRUE))
+  )
+  checkIdentical(SFORB, SFORB.mkinmod)
+}
+
+test.mkinmod.SFO_SFO <- function()
+{  
+  SFO_SFO.diffs <- c(
+    parent = "d_parent = - k_parent_sink * parent - k_parent_m1 * parent",
+    m1 = "d_m1 = - k_m1_sink * m1 + k_parent_m1 * parent"
+  )
+  SFO_SFO.parms <- c("k_parent_sink", "k_m1_sink", "k_parent_m1")
+  SFO_SFO.map <- list(parent = "parent", m1 = "m1")
+  SFO_SFO <- list(diffs = SFO_SFO.diffs, parms = SFO_SFO.parms, map = SFO_SFO.map)
+  class(SFO_SFO) <- "mkinmod"
+  SFO_SFO.mkinmod <- mkinmod(spec = list(
+    parent = list(type = "SFO", to = "m1", sink=TRUE),
+    m1 = list(type = "SFO", to = NA, sink=TRUE))
+  )
+  checkIdentical(SFO_SFO, SFO_SFO.mkinmod)
+}
-- 
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