From 70e5363b424762307160979d9cd8743d8b980fe1 Mon Sep 17 00:00:00 2001 From: jranke Date: Wed, 6 Nov 2013 23:02:23 +0000 Subject: GUI: - Uploading of text files works - The current summary is always shown git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@144 edb9625f-4e0d-4859-8d74-9fd3b1da38cb --- inst/GUI/mkinGUI.R | 49 ++++++++++++++++++++++++++++++------------------- 1 file changed, 30 insertions(+), 19 deletions(-) (limited to 'inst') diff --git a/inst/GUI/mkinGUI.R b/inst/GUI/mkinGUI.R index f5c3076..c939f70 100644 --- a/inst/GUI/mkinGUI.R +++ b/inst/GUI/mkinGUI.R @@ -161,6 +161,9 @@ upload_file_handler <- function(h, ...) if (length(f) > 0) update_f.df() else f.df <- f.df.empty f.gtable[,] <- f.df + ftmp <<- f[[f.cur]] + stmp <<- s[[f.cur]] + ds.i <<- ds.cur update_plotting_and_fitting() } save_to_file_handler <- function(h, ...) @@ -229,13 +232,12 @@ gbutton("Configure fit for selected model and dataset", cont = dsm, control.modFit = list(maxiter = 0))) ftmp$ds.index <<- ds.i ftmp$ds <<- ds[[ds.i]] - update_f.df() - f.gtable[,] <<- f.df stmp <<- summary(ftmp) svalue(pf) <- paste0("Dataset ", ds.i, ", Model ", m[[m.i]]$name) show_plot("Initial", default = TRUE) svalue(f.gg.opts.st) <<- "auto" f.gg.parms[,] <- get_Parameters(stmp, FALSE) + svalue(f.gg.summary) <- capture.output(stmp) svalue(center) <- 3 }) @@ -246,7 +248,7 @@ f.switcher <- function(h, ...) { if (svalue(h$obj) != "0") { f.cur <<- svalue(h$obj) ftmp <<- f[[f.cur]] - stmp <<- f[[f.cur]] + stmp <<- s[[f.cur]] ds.i <<- ftmp$ds.index update_plotting_and_fitting() } @@ -270,7 +272,7 @@ copy_dataset_handler <- function(h, ...) { delete_dataset_handler <- function(h, ...) { ds[[ds.cur]] <<- NULL - names(ds) <<- names(plots) <<- names(prows) <<- as.character(1:length(ds)) + names(ds) <<- as.character(1:length(ds)) ds.cur <<- names(ds)[[1]] update_ds.df() ds.gtable[,] <- ds.df @@ -283,9 +285,9 @@ new_dataset_handler <- function(h, ...) { study_nr = 1, title = "", sampling_times = c(0, 1), - time_unit = "NA", + time_unit = "", observed = "parent", - unit = "NA", + unit = "", replicates = 1, data = data.frame( name = "parent", @@ -303,7 +305,7 @@ new_dataset_handler <- function(h, ...) { new_ds_from_csv_handler <- function(h, ...) { tmpfile <- normalizePath(svalue(h$obj), winslash = "/") - tmpd <- try(read.table(tmpfile, sep = "\t", header = TRUE)) + tmpd <- try(read.table(tmpfile, sep = "\t", header = TRUE, stringsAsFactors = FALSE)) tmpdw <- mkin_wide_to_long(tmpd) if (class(tmpd) != "try-error") { ds.cur <<- as.character(1 + length(ds)) @@ -311,15 +313,15 @@ new_ds_from_csv_handler <- function(h, ...) { study_nr = NA, title = "New upload", sampling_times = sort(unique(tmpd$t)), - time_unit = "NA", + time_unit = "", observed = unique(tmpdw$name), - unit = "NA", + unit = "", replicates = max(aggregate(tmpdw$time, list(tmpdw$time, tmpdw$name), length)$x), data = tmpdw) - ds[[ds.cur]]$data$override <<- "NA" + ds[[ds.cur]]$data$override <<- as.numeric(NA) ds[[ds.cur]]$data$err <<- 1 update_ds.df() ds.gtable[,] <- ds.df @@ -335,10 +337,11 @@ empty_grid_handler <- function(h, ...) { replicates <- as.numeric(svalue(ds.e.rep)) new.data = data.frame( name = rep(obs, each = replicates * length(sampling_times)), - time = rep(sampling_times, each = replicates, times = length(obs)), - value = NA, - override = NA, - err = 1 + time = as.numeric(rep(sampling_times, each = replicates, times = length(obs))), + value = as.numeric(NA), + override = as.numeric(NA), + err = 1, + stringsAsFactors = FALSE ) ds.e.gdf[,] <- new.data } @@ -373,7 +376,7 @@ gbutton("Copy dataset", cont = ds.e.2, handler = copy_dataset_handler) gbutton("Delete dataset", cont = ds.e.2, handler = delete_dataset_handler) gbutton("New dataset", cont = ds.e.2, handler = new_dataset_handler) -gfile(text = "Select csv file", cont = ds.e.2, +upload_dataset.gf <- gfile(text = "Upload text file", cont = ds.e.2, handler = new_ds_from_csv_handler) # Line 3 with forms {{{4 @@ -400,8 +403,9 @@ ds.e.obs <- gedit(paste(ds[[ds.cur]]$observed, collapse = ", "), ds.e.obu <- gedit(ds[[ds.cur]]$unit, width = 20, label = "Unit", cont = ds.e.3b.gfl) -gbutton("Generate empty grid for kinetic data", cont = ds.e.3b, +generate_grid.gb <- gbutton("Generate empty grid for kinetic data", cont = ds.e.3b, handler = empty_grid_handler) +tooltip(generate_grid.gb) <- "Overwrites the kinetic data shown below" # Keep button {{{4 gbutton("Keep changes", cont = ds.editor, handler = keep_ds_changes_handler) @@ -506,10 +510,12 @@ obs.to <- "" # Show the model specification {{{4 show_m_spec <- function() { - for (obs.i in 1:length(m.observed)) { + for (obs.i in 1:length(m[[m.cur]]$spec)) { + obs.name <- names(m[[m.cur]]$spec)[[obs.i]] m.e.rows[[obs.i]] <<- ggroup(cont = m.editor, horizontal = TRUE) - m.e.obs[[obs.i]] <<- gcombobox(observed.all, selected = obs.i, + m.e.obs[[obs.i]] <<- gcombobox(observed.all, selected = 0, cont = m.e.rows[[obs.i]]) + svalue(m.e.obs[[obs.i]]) <<- obs.name m.e.type[[obs.i]] <<- gcombobox(c("SFO", "FOMC", "DFOP", "HS", "SFORB"), cont = m.e.rows[[obs.i]]) svalue(m.e.type[[obs.i]]) <<- m[[m.cur]]$spec[[obs.i]]$type @@ -613,6 +619,7 @@ run_fit <- function() { show_plot("Optimised") svalue(f.gg.opts.st) <- ftmp$solution_type f.gg.parms[,] <- get_Parameters(stmp, TRUE) + svalue(f.gg.summary) <- capture.output(stmp) } ds.i <- m.i <- "1" f.cur <- "0" @@ -670,6 +677,9 @@ keep.fit.gb <- gbutton("Keep", }, cont = f.gg.buttons) tooltip(keep.fit.gb) <- "Store the optimised model with all settings and the current dataset in the fit list" +# Area for summary +f.gg.summary <- gtext(capture.output(stmp), cont = pf, use.codemirror = TRUE) + delete.fit.gb <- gbutton("Delete", handler = function(h, ...) { if (length(f) > 0) { f[[f.cur]] <<- NULL @@ -681,7 +691,7 @@ delete.fit.gb <- gbutton("Delete", handler = function(h, ...) { update_f.df() f.cur <<- "1" ftmp <<- f[[f.cur]] - stmp <<- f[[f.cur]] + stmp <<- s[[f.cur]] ds.i <<- ftmp$ds.index update_plotting_and_fitting() } else { @@ -699,5 +709,6 @@ update_plotting_and_fitting <- function() { show_plot("Optimised") svalue(f.gg.opts.st) <- ftmp$solution_type f.gg.parms[,] <- get_Parameters(stmp, TRUE) + svalue(f.gg.summary) <- capture.output(stmp) } # vim: set foldmethod=marker ts=2 sw=2 expandtab: {{{1 -- cgit v1.2.1