From 04d3370364a0a7881c4ae815c20fd37b74f5639a Mon Sep 17 00:00:00 2001 From: jranke Date: Tue, 5 Mar 2013 01:00:20 +0000 Subject: - Calculate confidence intervals for parameters based on the t distribution Thanks to the CAKE developers at Tessella for the call to qt() - Calculate asymetric confidence intervals for backtransformed parameters - Overhaul and recompile vignettes git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@74 edb9625f-4e0d-4859-8d74-9fd3b1da38cb --- man/summary.mkinfit.Rd | 20 ++++++++++++++++---- 1 file changed, 16 insertions(+), 4 deletions(-) (limited to 'man') diff --git a/man/summary.mkinfit.Rd b/man/summary.mkinfit.Rd index 59b988a..472b5de 100644 --- a/man/summary.mkinfit.Rd +++ b/man/summary.mkinfit.Rd @@ -11,7 +11,7 @@ and residual values. } \usage{ -\method{summary}{mkinfit}(object, data = TRUE, distimes = TRUE, ...) +\method{summary}{mkinfit}(object, data = TRUE, distimes = TRUE, alpha = 0.05, ...) \method{print}{summary.mkinfit}(x, digits = max(3, getOption("digits") - 3), ...) } @@ -27,6 +27,9 @@ } \item{distimes}{ logical, indicating whether DT50 and DT90 values should be included. +} + \item{alpha}{ + error level for confidence interval estimation from t distribution } \item{digits}{ Number of digits to use for printing @@ -36,15 +39,24 @@ } } \value{ - The summary function returns a list with the same components as - \code{\link{summary.modFit}}, and the additional components + The summary function returns a list derived from + \code{\link{summary.modFit}}, with components, among others + \item{version, Rversion}{The mkin and R versions used} + \item{date.fit, date.summary}{The dates where the fit and the summary were produced} + \item{use_of_ff}{Was maximum or minimum use made of formation fractions} + \item{residuals, residualVariance, sigma, modVariance, df}{As in summary.modFit} + \item{cov.unscaled, cov.scaled, info, niter, stopmess, par}{As in summary.modFit} + \item{bpar}{Optimised and backtransformed parameters} \item{diffs }{The differential equations used in the model} \item{data }{The data (see Description above).} \item{start }{The starting values and bounds, if applicable, for optimised parameters.} \item{fixed }{The values of fixed parameters.} \item{errmin }{The chi2 error levels for each observed variable.} - \item{disstimes }{The DT50 and DT90 values for each observed variable.} + \item{bparms.ode }{All backtransformed ODE parameters, for use as starting parameters for + related models.} \item{ff }{The estimated formation fractions derived from the fitted model.} + \item{distimes }{The DT50 and DT90 values for each observed variable.} + \item{SFORB}{If applicable, eigenvalues of SFORB components of the model.} The print method is called for its side effect, i.e. printing the summary. } \references{ -- cgit v1.2.1