# gWidgetsWWW2 GUI for mkin {{{1 # Copyright (C) 2013,2014,2015 Johannes Ranke # Portions of this file are copyright (C) 2013 Eurofins Regulatory AG, Switzerland # Contact: jranke@uni-bremen.de # This file is part of the R package gmkin # gmkin is free software: you can redistribute it and/or modify it under the # terms of the GNU General Public License as published by the Free Software # Foundation, either version 3 of the License, or (at your option) any later # version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # You should have received a copy of the GNU General Public License along with # this program. If not, see # Set the GUI title and create the basic widget layout {{{1 # Configuration {{{2 left_width = 250 right_width = 500 save_keybinding = "Ctrl-X" # Three panel layout {{{2 window_title <- paste0("gmkin ", packageVersion("gmkin"), "- Browser based GUI for kinetic evaluations using mkin") w <- gwindow(window_title) sb <- gstatusbar(paste("Powered by gWidgetsWWW2 (ExtJS, Rook)", "and mkin (FME, deSolve and minpack.lm)", "--- Working directory is", getwd()), cont = w) bl <- gborderlayout(cont = w, #title = list(center = "Work", east = "Results"), panels = c("center", "west", "east"), collapsible = list(west = FALSE)) bl$set_panel_size("west", left_width) bl$set_panel_size("east", right_width) center <- gnotebook(cont = bl, where = "center") left <- gvbox(cont = bl, use.scrollwindow = TRUE, where = "west") right <- gnotebook(cont = bl, use.scrollwindow = TRUE, where = "east") # Helper functions {{{1 # Override function for making it possible to override original data points using the GUI {{{2 override <- function(d) { if (!is.null(d$override)) { d_new <- data.frame(name = d$name, time = d$time, value = ifelse(is.na(d$override), d$value, d$override), err = d$err) return(d_new) } else { return(d) } } # Update dataframe with projects {{{2 update_p.df <- function() { wd_projects <- gsub(".gmkinws", "", dir(pattern = ".gmkinws$")) if (length(wd_projects) > 0) { p.df.wd <- data.frame(Name = wd_projects, Source = rep("working directory", length(wd_projects)), stringsAsFactors = FALSE) p.df <<- rbind(p.df.package, p.df.wd) } else { p.df <<- p.df.package } p.gtable[,] <- p.df p.line.import.p[,] <- c("", p.df$Name) } # Update dataframe with datasets {{{2 update_ds.df <- function() { if (is.na(ws$ds[1])) ds.df <<- ds.df.empty else ds.df <<- data.frame(Title = sapply(ws$ds, function(x) x$title)) ds.gtable[,] <- ds.df update_ds_editor() ds.delete$call_Ext("disable") } # Update dataframe with models {{{2 update_m.df <- function() { if (is.na(ws$m[1])) m.df <<- m.df.empty else m.df <<- data.frame(Name = sapply(ws$m, function(x) x$name)) } # Update dataframe with fits {{{2 update_f.df <- function() { f.df <- f.df.empty if (!is.na(ftmp[1])) { f.df[1, "Name"] <- c("Temporary (not fitted)") } if (!is.na(ws$f[1])) { f.df.ws <- data.frame(Name = sapply(ws$f, function(x) x$name), stringsAsFactors = FALSE) f.df <- rbind(f.df, f.df.ws) } f.df <<- f.df } # Generate the initial workspace {{{1 # Project workspace {{{2 ws <- gmkinws$new() ws.import <- NA # Initialise meta data objects so assignments within functions using <<- will {{{2 # update them in the right environment. # Also create initial versions of meta data in order to be able to clear the workspace p.df <- p.df.package <- data.frame(Name = c("FOCUS_2006", "FOCUS_2006_Z"), Source = rep("gmkin package", 2), stringsAsFactors = FALSE) # Datasets {{{2 ds.cur <- ds.empty <- mkinds$new( title = "", time_unit = "", unit = "", data = data.frame( name = "parent", time = c(0, 1), value = c(100, NA), override = "NA", err = 1, stringsAsFactors = FALSE)) ds.df <- ds.df.empty <- data.frame(Title = "", stringsAsFactors = FALSE) # Models {{{2 m.df <- m.df.empty <- data.frame(Name = "", stringsAsFactors = FALSE) # Fits {{{2 f.df <- f.df.empty <- data.frame(Name = "", stringsAsFactors = FALSE) ftmp <- NA # left: Explorer tables {{{1 # Frames {{{2 p.gf <- gframe("Projects", cont = left, horizontal = FALSE) ds.gf <- gframe("Datasets", cont = left) m.gf <- gframe("Models", cont = left) c.gf <- gframe("Configuration", cont = left, horizontal = FALSE) f.gf <- gframe("Results", cont = left) # Project explorer {{{2 # Initialize project list from the gmkin package and the current working directory # The former must be manually amended if additional workspaces should be available p.gtable <- gtable(p.df, cont = p.gf, width = left_width - 10, height = 120) size(p.gtable) <- list(columnWidths = c(130, 100)) p.loaded <- NA # The index of the loaded project. We reset the selection to this when the user # does not confirm p.modified <- FALSE # Keep track of modifications after loading p.switcher <- function(h, ...) { p.cur <- h$row_index # h$row_index for clicked or doubleclick handlers, h$value for change project_switched <- FALSE switch_project <- function() { Name <- p.df[p.cur, "Name"] if (p.df[p.cur, "Source"] == "working directory") { load(paste0(Name, ".gmkinws")) ws <<- ws } else { ws <<- get(Name)$clone() } svalue(center) <- 1 svalue(c.ds) <- empty_conf_labels[1] svalue(c.m) <- empty_conf_labels[2] update_p_editor(p.cur) update_ds.df() update_m.df() m.gtable[,] <<- m.df update_f.df() f.gtable[,] <<- f.df p.loaded <<- p.cur project_switched <- TRUE p.gtable$set_index(p.cur) p.modified <<- FALSE } if (p.modified) { gconfirm("When you switch projects, you loose any unsaved changes. Proceed to switch?", handler = function(h, ...) { switch_project() }) } else { switch_project() } # We can reset the selection only if the project was not # switched. The following code gets executed during the confirmation dialogue, # i.e. before the potential switching if (!project_switched) { if (is.na(p.loaded)) { p.gtable$clear_selection() } else { p.gtable$set_index(p.loaded) } } } addHandlerClicked(p.gtable, p.switcher) # Dataset explorer {{{2 ds.switcher <- function(h, ...) { ds.i <- h$row_index svalue(c.ds) <- ds.df[ds.i, "Title"] ds.cur <<- ws$ds[[ds.i]] update_ds_editor() svalue(center) <- 2 } ds.gtable <- gtable(ds.df, cont = ds.gf, width = left_width - 10, height = 160) addHandlerClicked(ds.gtable, ds.switcher) # Model explorer {{{2 m.switcher <- function(h, ...) { m.i <- h$row_index svalue(c.m) <- m.df[m.i, "Name"] #update_m_editor() svalue(center) <- 3 } m.gtable <- gtable(m.df, cont = m.gf, width = left_width - 10, height = 160) addHandlerClicked(m.gtable, m.switcher) # Fit explorer {{{2 f.switcher <- function(h, ...) { f.cur <<- h$row_index - 1 if (f.cur > 0) { ftmp <<- ws$f[[ws$f.cur]] stmp <<- ws$s[[ws$f.cur]] c.ds$call_Ext("setText", paste0("", ftmp$ds$title, ""), FALSE) c.m$call_Ext("setText", paste0("", ftmp$m$name, ""), FALSE) } #update_f_conf() #update_f_results() svalue(center) <- 5 } f.gtable <- gtable(f.df, cont = f.gf, width = left_width - 10, height = 160) addHandlerClicked(f.gtable, f.switcher) # Configuration {{{2 empty_conf_labels <- paste0("Current ", c("dataset", "model"), "") c.ds <- glabel(empty_conf_labels[1], cont = c.gf) c.m <- glabel(empty_conf_labels[2], cont = c.gf) c.conf <- gbutton("Configure fit", cont = c.gf, handler = function(h, ...) svalue(center) <- 4) # center: Project editor {{{1 p.editor <- gframe("", horizontal = FALSE, cont = center, label = "Project") # New project {{{2 p.line.buttons <- ggroup(cont = p.editor, horizontal = TRUE) p.new <- gbutton("New project", cont = p.line.buttons, handler = function(h, ...) { project_name <- "New project" svalue(p.name) <- project_name svalue(p.filename) <- file.path(getwd(), paste0(project_name, ".gmkinws")) p.delete$call_Ext("disable") ws <<- gmkinws$new() update_ds.df() update_m.df() m.gtable[,] <- m.df update_f.df() f.gtable[,] <- f.df }) p.delete.handler = function(h, ...) { filename <- file.path(getwd(), paste0(svalue(p.name), ".gmkinws")) gconfirm(paste0("Are you sure you want to delete ", filename, "?"), parent = w, handler = function(h, ...) { if (inherits(try(unlink(filename)), "try-error")) { gmessage("Deleting failed for an unknown reason", cont = w) } else { svalue(sb) <- paste("Deleted", filename) svalue(p.filename) <- "" p.delete$call_Ext("disable") update_p.df() } }) } p.delete <- gbutton("Delete project", cont = p.line.buttons, handler = p.delete.handler, ext.args = list(disabled = TRUE)) # Project name {{{2 p.line.name <- ggroup(cont = p.editor, horizontal = TRUE) p.name <- gedit("New project", label = "Project name", width = 50, cont = p.line.name) p.save.action <- gaction("Save", parent = w, handler = function(h, ...) { filename <- paste0(svalue(p.name), ".gmkinws") try_to_save <- function (filename) { if (!inherits(try(save(ws, file = filename)), "try-error")) { svalue(sb) <- paste("Saved project to file", filename, "in working directory", getwd()) update_p.df() p.modified <<- FALSE } else { gmessage("Saving failed for an unknown reason", parent = w) } } if (file.exists(filename)) { gconfirm(paste("File", filename, "exists. Overwrite?"), parent = w, handler = function(h, ...) { try_to_save(filename) }) } else { try_to_save(filename) } }) p.save.action$add_keybinding(save_keybinding) p.save <- gbutton(action = p.save.action, cont = p.line.name) tooltip(p.save) <- paste("Press", save_keybinding, "to save") update_p_editor <- function(p.cur) { project_name <- as.character(p.df[p.cur, "Name"]) svalue(p.name) <- project_name if (p.df[p.cur, "Source"] == "gmkin package") { svalue(p.filename) <- "" p.delete$call_Ext("disable") } else { svalue(p.filename) <- file.path(getwd(), paste0(project_name, ".gmkinws")) p.delete$call_Ext("enable") } } # Working directory {{{2 p.line.wd <- ggroup(cont = p.editor, horizontal = TRUE) wd_handler <- function(h, ...) { target_wd <- svalue(p.wde) wd <- try(setwd(target_wd)) if (inherits(wd, "try-error")) { gmessage(paste("Could not set working directory to", target_wd), parent = w) } else { svalue(sb) <- paste("Changed working directory to", wd) update_p.df() } } p.wde <- gedit(getwd(), cont = p.line.wd, label = "Working directory", width = 50) p.wde$add_handler_enter(wd_handler) p.wdb <- gbutton("Change", cont = p.line.wd, handler = wd_handler) tooltip(p.wdb) <- "Edit the box on the left and press enter to change" # File name {{{2 p.line.file <- ggroup(cont = p.editor, horizontal = TRUE) p.filename.gg <- ggroup(width = 105, cont = p.line.file) # for spacing p.filename.label <- glabel("Project file:", cont = p.filename.gg) p.filename <- glabel("", cont = p.line.file) # Import {{{2 p.line.import <- ggroup(cont = p.editor, horizontal = TRUE) p.line.import.p <- gcombobox(c("", p.df$Name), label = "Import from", cont = p.line.import, handler = function(h, ...) { p.import <- svalue(h$obj, index = TRUE) - 1 Name <- p.df[p.import, "Name"] if (p.df[p.import, "Source"] == "working directory") { load(paste0(Name, ".gmkinws")) ws.import <<- ws } else { ws.import <<- get(Name) } p.line.import.dst[,] <- data.frame(Title = sapply(ws.import$ds, function(x) x$title), stringsAsFactors = FALSE) p.line.import.mt[,] <- data.frame(Name = sapply(ws.import$m, function(x) x$name), stringsAsFactors = FALSE) }) p.line.import.frames <- ggroup(cont = p.editor, horizontal = TRUE) p.line.import.dsf <- gframe("Datasets for import", cont = p.line.import.frames, horizontal = FALSE) p.line.import.dst <- gtable(ds.df.empty, cont = p.line.import.dsf, multiple = TRUE, width = left_width - 10, height = 160, handler = function(h, ...) p.line.import.dsb$call_Ext("enable")) p.line.import.dsb <- gbutton("Import selected", cont = p.line.import.dsf, ext.args = list(disabled = TRUE), handler = function(h, ...) { i <- svalue(p.line.import.dst, index = TRUE) ws$add_ds(ws.import$ds[i]) update_ds.df() p.modified <<- TRUE } ) p.line.import.mf <- gframe("Models for import", cont = p.line.import.frames, horizontal = FALSE) p.line.import.mt <- gtable(m.df.empty, cont = p.line.import.mf, multiple = TRUE, width = left_width - 10, height = 160, handler = function(h, ...) p.line.import.mb$call_Ext("enable")) p.line.import.mb <- gbutton("Import selected", cont = p.line.import.mf, ext.args = list(disabled = TRUE), handler = function(h, ...) { i <- svalue(p.line.import.mt, index = TRUE) ws$add_m(ws.import$m[i]) update_m.df() m.gtable[,] <- m.df p.modified <<- TRUE } ) # center: Dataset editor {{{1 ds.editor <- gframe("", horizontal = FALSE, cont = center, label = "Dataset") # Handler functions {{{2 add_dataset <- function(ds.new) { ws$add_ds(list(ds.new)) ds.cur <<- ds.new update_ds.df() update_ds_editor() p.modified <<- TRUE } new_dataset_handler <- function(h, ...) { ds.new <- ds.empty ds.new$title <- "New dataset" add_dataset(ds.new) } copy_dataset_handler <- function(h, ...) { ds.new <- ds.cur ds.new$title <- paste("Copy of ", ds.cur$title) add_dataset(ds.new) } delete_dataset_handler <- function(h, ...) { ds.i <- svalue(ds.gtable, index = TRUE) ws$delete_ds(ds.i) update_ds.df() p.modified <<- TRUE } # tmptextheader <- character(0) # load_text_file_with_data <- function(h, ...) { # tmptextfile <<- normalizePath(svalue(h$obj), winslash = "/") # tmptext <- readLines(tmptextfile, warn = FALSE) # tmptextskip <<- 0 # for (tmptextline in tmptext) { # if (grepl(":|#|/", tmptextline)) tmptextskip <<- tmptextskip + 1 # else break() # } # svalue(ds.e.up.skip) <- tmptextskip # if (svalue(ds.e.up.header)) { # tmptextheader <<- strsplit(tmptext[tmptextskip + 1], # " |\t|;|,")[[1]] # } # svalue(ds.e.up.wide.time) <- tmptextheader[[1]] # svalue(ds.e.up.long.time) <- tmptextheader[[2]] # svalue(ds.e.up.text) <- c("
", tmptext, "
") # svalue(ds.e.stack) <- 2 # } # # new_ds_from_csv_handler <- function(h, ...) { # tmpd <- try(read.table(tmptextfile, # skip = as.numeric(svalue(ds.e.up.skip)), # dec = svalue(ds.e.up.dec), # sep = switch(svalue(ds.e.up.sep), # whitespace = "", # ";" = ";", # "," = ","), # header = svalue(ds.e.up.header), # stringsAsFactors = FALSE)) # if(svalue(ds.e.up.widelong) == "wide") { # tmpdl <- mkin_wide_to_long(tmpd, time = as.character(svalue(ds.e.up.wide.time))) # } else { # tmpdl <- data.frame( # name = tmpd[[svalue(ds.e.up.long.name)]], # time = tmpd[[svalue(ds.e.up.long.time)]], # value = tmpd[[svalue(ds.e.up.long.value)]]) # tmpderr <- tmpd[[svalue(ds.e.up.long.err)]] # if (!is.null(tmpderr)) tmpdl$err <- tmpderr # } # if (class(tmpd) != "try-error") { # ds.cur <<- as.character(1 + length(ds)) # ds[[ds.cur]] <<- list( # study_nr = NA, # title = "New import", # sampling_times = sort(unique(tmpdl$time)), # time_unit = "", # observed = unique(tmpdl$name), # unit = "", # replicates = max(aggregate(tmpdl$time, # list(tmpdl$time, # tmpdl$name), # length)$x), # data = tmpdl) # ds[[ds.cur]]$data$override <<- as.numeric(NA) # if (is.null(ds[[ds.cur]]$data$err)) ds[[ds.cur]]$data$err <<- 1 # update_ds.df() # ds.gtable[,] <- ds.df # update_ds_editor() # } else { # galert("Uploading failed", parent = "w") # } # } # # empty_grid_handler <- function(h, ...) { # obs <- strsplit(svalue(ds.e.obs), ", ")[[1]] # sampling_times <- strsplit(svalue(ds.e.st), ", ")[[1]] # replicates <- as.numeric(svalue(ds.e.rep)) # new.data = data.frame( # name = rep(obs, each = replicates * length(sampling_times)), # time = as.numeric(rep(sampling_times, each = replicates, times = length(obs))), # value = as.numeric(NA), # override = as.numeric(NA), # err = 1, # stringsAsFactors = FALSE # ) # ds.e.gdf[,] <- new.data # } # keep_ds_changes_handler <- function(h, ...) { # ds[[ds.cur]]$title <<- svalue(ds.title.ge) # ds[[ds.cur]]$study_nr <<- as.numeric(gsub("Study ", "", svalue(ds.study.gc))) # update_ds.df() # ds.gtable[,] <- ds.df # tmpd <- ds.e.gdf[,] # ds[[ds.cur]]$data <<- tmpd # ds[[ds.cur]]$sampling_times <<- sort(unique(tmpd$time)) # ds[[ds.cur]]$time_unit <<- svalue(ds.e.stu) # ds[[ds.cur]]$observed <<- unique(tmpd$name) # ds[[ds.cur]]$unit <<- svalue(ds.e.obu) # ds[[ds.cur]]$replicates <<- max(aggregate(tmpd$time, # list(tmpd$time, tmpd$name), length)$x) # update_ds_editor() # observed.all <<- union(observed.all, ds[[ds.cur]]$observed) # update_m_editor() # } # # Widget setup {{{2 # Line 1 {{{3 ds.e.buttons <- ggroup(cont = ds.editor, horizontal = TRUE) ds.e.new <- gbutton("New dataset", cont = ds.e.buttons, handler = new_dataset_handler) #gbutton("Copy dataset", cont = ds.e.1, handler = copy_dataset_handler) ds.delete <- gbutton("Delete dataset", cont = ds.e.buttons, handler = delete_dataset_handler, ext.args = list(disabled = TRUE)) ds.e.2 <- ggroup(cont = ds.editor, horizontal = TRUE) ds.title.ge <- gedit("", label = "Dataset title", width = 50, cont = ds.e.2) # # Line 2 {{{3 # ds.e.2 <- ggroup(cont = ds.editor, horizontal = TRUE) # ds.e.2a <- ggroup(cont = ds.e.2, horizontal = FALSE) # ds.e.2b <- ggroup(cont = ds.e.2) # tmptextfile <- "" # Initialize file name for imported data # tmptextskip <- 0 # Initialize number of lines to be skipped # tmptexttime <- "V1" # Initialize name of time variable if no header row # upload_dataset.gf <- gfile(text = "Upload text file", cont = ds.e.2b, # handler = load_text_file_with_data) # gbutton("Keep changes", cont = ds.e.2, handler = keep_ds_changes_handler) # # Line 3 with forms or upload area {{{3 # ds.e.stack <- gstackwidget(cont = ds.editor) # # Forms for meta data {{{4 # ds.e.forms <- ggroup(cont = ds.e.stack, horizontal = TRUE) # ds.e.3a <- gvbox(cont = ds.e.forms) # ds.e.3a.gfl <- gformlayout(cont = ds.e.3a) # ds.e.st <- gedit(paste(ds[[ds.cur]]$sampling_times, collapse = ", "), # width = 40, # label = "Sampling times", # cont = ds.e.3a.gfl) # ds.e.stu <- gedit(ds[[ds.cur]]$time_unit, # width = 20, # label = "Unit", cont = ds.e.3a.gfl) # ds.e.rep <- gedit(ds[[ds.cur]]$replicates, # width = 20, # label = "Replicates", cont = ds.e.3a.gfl) # ds.e.3b <- gvbox(cont = ds.e.forms) # ds.e.3b.gfl <- gformlayout(cont = ds.e.3b) # ds.e.obs <- gedit(paste(ds[[ds.cur]]$observed, collapse = ", "), # width = 50, # label = "Observed", cont = ds.e.3b.gfl) # ds.e.obu <- gedit(ds[[ds.cur]]$unit, # width = 20, label = "Unit", # cont = ds.e.3b.gfl) # generate_grid.gb <- gbutton("Generate empty grid for kinetic data", cont = ds.e.3b, # handler = empty_grid_handler) # tooltip(generate_grid.gb) <- "Overwrites the kinetic data shown below" # # Data upload area {{{4 # ds.e.upload <- ggroup(cont = ds.e.stack, horizontal = TRUE) # ds.e.up.text <- ghtml("
", cont = ds.e.upload, width = 400, height = 400)
# ds.e.up.options <- ggroup(cont = ds.e.upload, horizontal = FALSE)
# ds.e.up.import <- gbutton("Import using options specified below", cont = ds.e.up.options,
#                           handler = new_ds_from_csv_handler)
# ds.e.up.skip <- gedit(tmptextskip, label = "Comment lines", cont = ds.e.up.options)
# ds.e.up.header <- gcheckbox(cont = ds.e.up.options, label = "Column names", 
#                             checked = TRUE)
# ds.e.up.sep <- gcombobox(c("whitespace", ";", ","), cont = ds.e.up.options,
#                          selected = 1, label = "Separator")
# ds.e.up.dec <- gcombobox(c(".", ","), cont = ds.e.up.options,
#                          selected = 1, label = "Decimal")
# ds.e.up.widelong <- gradio(c("wide", "long"), horizontal = TRUE, 
#                            label = "Format", cont = ds.e.up.options,
#                            handler = function(h, ...) {
#                              widelong = svalue(h$obj, index = TRUE)
#                              svalue(ds.e.up.wlstack) <- widelong
#                            })
# ds.e.up.wlstack <- gstackwidget(cont = ds.e.up.options)
# ds.e.up.wide <- ggroup(cont = ds.e.up.wlstack, horizontal = FALSE, width = 300)
# ds.e.up.wide.time <- gedit(tmptexttime, cont = ds.e.up.wide, label = "Time column")
# ds.e.up.long <- ggroup(cont = ds.e.up.wlstack, horizontal = FALSE, width = 300)
# ds.e.up.long.name <- gedit("name", cont = ds.e.up.long, label = "Observed variables")
# ds.e.up.long.time <- gedit(tmptexttime, cont = ds.e.up.long, label = "Time column")
# ds.e.up.long.value <- gedit("value", cont = ds.e.up.long, label = "Value column")
# ds.e.up.long.err <- gedit("err", cont = ds.e.up.long, label = "Relative errors")
# svalue(ds.e.up.wlstack) <- 1

# svalue(ds.e.stack) <- 1

# # Kinetic Data {{{3
# ds.e.gdf <- gdf(ds[[ds.cur]]$data, name = "Kinetic data", 
#                 width = 500, height = 700, cont = ds.editor)
# ds.e.gdf$set_column_width(2, 70)

# # Update the dataset editor {{{3
update_ds_editor <- function() {
  svalue(ds.title.ge) <- ds.cur$title
  ds.delete$call_Ext("enable")  
#   svalue(ds.study.gc, index = TRUE) <- ds[[ds.cur]]$study_nr

#   svalue(ds.e.st) <- paste(ds[[ds.cur]]$sampling_times, collapse = ", ")
#   svalue(ds.e.stu) <- ds[[ds.cur]]$time_unit
#   svalue(ds.e.obs) <- paste(ds[[ds.cur]]$observed, collapse = ", ")
#   svalue(ds.e.obu) <- ds[[ds.cur]]$unit
#   svalue(ds.e.rep) <- ds[[ds.cur]]$replicates
#   svalue(ds.e.stack) <- 1
#   ds.e.gdf[,] <- ds[[ds.cur]]$data
}
# center: Model editor {{{1
m.editor  <- gframe("", horizontal = FALSE, cont = center, 
                    label = "Model")
# center: Fit configuration {{{1
f.config  <- gframe("", horizontal = FALSE, cont = center, 
                    label = "Configuration")
# center: Results viewer {{{1
r.viewer  <- gframe("", horizontal = FALSE, cont = center, 
                    label = "Result")
svalue(center) <- 1
# right: Viewing area {{{1
# Workflow {{{2
workflow.gg <- ggroup(cont = right, label = "Workflow", width = 480,  height = 600,
                      ext.args = list(layout = list(type="vbox", align = "center")))

workflow.png <- get_tempfile(ext = ".png")
file.copy(system.file("GUI/gmkin_workflow_434x569.png", package = "gmkin"), workflow.png)
workflow.gi <- gimage(workflow.png, size = c(434, 569), label = "Workflow", cont = workflow.gg)

# Manual {{{2
gmkin_manual <- readLines(system.file("GUI/gmkin_manual.html", package = "gmkin"))
gmb_start <- grep("", gmkin_manual)
gmb_end <- grep("", gmkin_manual)
gmkin_manual_body <- gmkin_manual[gmb_start:gmb_end]

manual.gh <- ghtml(label = "Manual", paste0("
", paste(gmkin_manual_body, collapse = '\n'), "
"), width = 460, cont = right) # Changes {{{2 gmkin_news <- markdownToHTML(system.file("NEWS.md", package = "gmkin"), fragment.only = TRUE, ) changes.gh <- ghtml(label = "Changes", paste0("
", gmkin_news, "
"), width = 460, cont = right) svalue(right) <- 1 # Update meta objects and their depending widgets update_p.df() # vim: set foldmethod=marker ts=2 sw=2 expandtab: {{{1