test.mkinmod.schaefer07_complex_example <- function() { schaefer07_complex_model <- mkinmod( parent = list(type = "SFO", to = c("A1", "B1", "C1"), sink = FALSE), A1 = list(type = "SFO", to = "A2"), B1 = list(type = "SFO"), C1 = list(type = "SFO"), A2 = list(type = "SFO")) fit <- mkinfit(schaefer07_complex_model, mkin_wide_to_long(schaefer07_complex_case, time = "time"), parms.ini = c(0.1, 0.1, 0.1, 0.01, 0.1, 0.1, 0.1, 0.1)) s <- summary(fit) attach(as.list(fit$par)) k_parent <- sum(k_parent_A1, k_parent_B1, k_parent_C1) r <- schaefer07_complex_results r$mkin <- c( k_parent, s$distimes["parent", "DT50"], k_parent_A1/k_parent, sum(k_A1_sink, k_A1_A2), s$distimes["A1", "DT50"], k_parent_B1/k_parent, k_B1_sink, s$distimes["B1", "DT50"], k_parent_C1/k_parent, k_C1_sink, s$distimes["C1", "DT50"], k_A1_A2/(k_A1_A2 + k_A1_sink), k_A2_sink, s$distimes["A2", "DT50"]) r$means <- (r$KinGUI + r$ModelMaker)/2 r$mkin.deviation <- abs(round(100 * ((r$mkin - r$means)/r$means), digits=1)) checkIdentical(r$mkin.deviation < 10, rep(TRUE, length(r$mkin.deviation))) }