mkin/.Rbuildignore, branch stackoverflow_71340826Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=stackoverflow_713408262021-09-16T06:23:57ZMerge branch 'master' into nlmixr2021-09-16T06:23:57ZJohannes Rankejranke@uni-bremen.de2021-09-16T06:23:57Zurn:sha1:212070667de33e4d4adc7f0ae7baf8e18ad51d3fFix another URL, add devcheck target2020-10-08T07:57:03ZJohannes Rankejranke@uni-bremen.de2020-10-08T07:57:03Zurn:sha1:f6f7d67decd75b87a68f20c311a652b5b11237efFix issues for release2020-10-08T07:31:35ZJohannes Rankejranke@uni-bremen.de2020-10-08T07:31:35Zurn:sha1:bc3825ae2d12c18ea3d3caf17eb23c93fef180b8Update .Rbuildignore2020-05-12T10:30:32ZJohannes Rankejranke@uni-bremen.de2020-05-12T10:30:32Zurn:sha1:c7fcc2f8af47e95cf6164c00a4902340624c13dcRelease to CRAN2020-05-11T15:47:36ZJohannes Rankejranke@uni-bremen.de2020-05-11T15:47:36Zurn:sha1:feca0008dcf662bba5c728096c4e63b923b8979bRefactor mkinfit, infrastructure work2019-10-21T10:11:34ZJohannes Rankejranke@uni-bremen.de2019-10-21T10:11:34Zurn:sha1:7624a2b8398b4ad665a3b0b622488e1893a5ee7c
mkinfit objects now include an ll() function to calculate the
log-likelihood. Part of the code was refactored, hopefully making it
easier to read and maintain. IRLS is currently the default algorithm for
the error model "obs", for no particular reason. This may be subject
to change when I get around to investigate.
Slow tests are now in a separate subdirectory and will probably
only be run by my own Makefile target.
Formatting of test logs is improved.
Roundtripping error model parameters works with a precision of 10% when
we use lots of replicates in the synthetic data (see slow tests). This
is not new in this commit, but as I think it is reasonable this
closes #7.
After the OLS step, use OLS parameter estimates2019-05-07T06:12:27ZJohannes Rankejranke@uni-bremen.de2019-05-07T06:12:27Zurn:sha1:8a3475c59f3d91ce5ce7d980d6de09360617e7fe
- Fix the respective error in the code
- Static documentation rebuilt by pkgdown
Prepare for CRAN release2019-05-02T15:51:07ZJohannes Rankejranke@uni-bremen.de2019-05-02T15:07:55Zurn:sha1:a4ca3451f1b5c37d10c6a41cb18a99b1631e8aa2
- Skip long running tests on CRAN as well to avoid timeout on winbuilder
- Don't install benchmark results in the package, they are only needed
in the git repository
- Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder
- Rebuild docs
Fix .Rbuildignore2019-03-04T12:29:40ZJohannes Rankejranke@uni-bremen.de2019-03-04T12:29:40Zurn:sha1:d0b124992232dde30fbff83dd4eeae8fc977d3ba
thanks to Kurt Hornik for pointing out that perl regexp syntax is
needed, not shell glob syntax
Ignore .travis.yml, add build status2018-09-15T09:57:51ZJohannes Rankejranke@uni-bremen.de2018-09-15T09:57:51Zurn:sha1:5e611543418b9ee528e2e71b214779e592e96722