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<title>mkin/.gitignore, branch dev</title>
<subtitle>Fitting kinetic models to chemical degradation data (also on github)</subtitle>
<id>https://cgit.jrwb.de/mkin/atom?h=dev</id>
<link rel='self' href='https://cgit.jrwb.de/mkin/atom?h=dev'/>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/'/>
<updated>2024-07-29T06:16:19Z</updated>
<entry>
<title>Add coverage report for pkgdown page</title>
<updated>2024-07-29T06:16:19Z</updated>
<author>
<name>Johannes Ranke</name>
<email>johannes.ranke@jrwb.de</email>
</author>
<published>2024-07-29T06:15:30Z</published>
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<id>urn:sha1:ba3eaa0d61d4980a61ebbcd105f07d21dd2aabb6</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Don't install saemix 3.2 from github any more</title>
<updated>2023-08-09T14:03:44Z</updated>
<author>
<name>Ranke Johannes</name>
<email>johannes.ranke@agroscope.admin.ch</email>
</author>
<published>2023-08-09T14:03:44Z</published>
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<id>urn:sha1:bd13f94b35e325da350a247c88b249dba62fe22f</id>
<content type='text'>
Emmanuelle has made an official release to CRAN in June
</content>
</entry>
<entry>
<title>RStudio project infrastructure</title>
<updated>2023-08-08T13:20:13Z</updated>
<author>
<name>Ranke Johannes</name>
<email>johannes.ranke@agroscope.admin.ch</email>
</author>
<published>2023-08-08T13:20:13Z</published>
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<id>urn:sha1:8155e46f24ad2aa7562ced1c52333fa95d072d14</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Add coverage target for local coverage report</title>
<updated>2023-04-16T11:42:08Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2023-04-16T11:41:25Z</published>
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<id>urn:sha1:99b4554a1ce657295b1358509110f3d02155a913</id>
<content type='text'>
I get almost 90% when testing locally
</content>
</entry>
<entry>
<title>Prepare to keep prebuilt vignettes as pdf in git</title>
<updated>2023-02-13T19:13:56Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2023-02-13T19:13:56Z</published>
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<id>urn:sha1:7ab05064a1f784e0288869d5cd7bd151bc739946</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Prebuilt PDF vignettes, summary_listing</title>
<updated>2023-01-09T05:22:04Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2023-01-09T05:22:04Z</published>
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<id>urn:sha1:24eb77216700cf8b2f2bde3abad84c1f83f9e32a</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Reflect changed name of dll directory in template</title>
<updated>2023-01-03T16:42:15Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2023-01-03T16:42:15Z</published>
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<id>urn:sha1:ae314cd8869765dd05f1ae44f4d73ae71f788c62</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Improved skeleton for hierarchical fits</title>
<updated>2023-01-03T08:31:48Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2023-01-03T08:31:48Z</published>
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<id>urn:sha1:ed2ab7bba07e3cb036782227fe27943f4b5583fa</id>
<content type='text'>
Now with working pathway fits using SFORB-SFO2 (only two parallel
metabolites instead of three) as the data for compound Ia was not
sufficient for a reliable fit.
</content>
</entry>
<entry>
<title>Rename template folder, create format</title>
<updated>2022-12-19T11:38:07Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-12-19T11:31:56Z</published>
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<id>urn:sha1:886c9ef013124aa954d960c655b349b5340ff154</id>
<content type='text'>
Instead of rmarkdown::pdf_document, mkin::hierarchical_kinetics is used
as a document format in the template. In this way, the template file can
be freed from some R code and yaml options that the average user does
not have to be aware of.
</content>
</entry>
<entry>
<title>Template and spreadsheet for hierarchical kinetics</title>
<updated>2022-12-19T05:37:32Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-12-19T05:37:32Z</published>
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<id>urn:sha1:0023df3c31fac29b5f9337ecd732a5dfd4d51a2d</id>
<content type='text'>
The template only shows parent data evaluation without covariate models
for now. The spreadsheet will also be useful for unit testing of the
read_spreadsheet function.
</content>
</entry>
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