mkin/DESCRIPTION, branch v0.9-37Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v0.9-372015-06-23T11:12:49ZSet the correct date in DESCRIPTION2015-06-23T11:12:49ZJohannes Rankejranke@uni-bremen.de2015-06-23T11:12:49Zurn:sha1:2b7d70b4118701cc1db3609eb90c1f27862fd8f7Version bump, correct benchmark in vignette/compiled_models2015-06-22T18:31:22ZJohannes Rankejranke@uni-bremen.de2015-06-22T04:09:00Zurn:sha1:01d9de6ff165c64ffc4366f2eeb3d2649b5c74c0
Reorganisation of the vignette generation in the Makefile.
Improved YAML header in the R markdown vignettes.
Rebuilt vignettes with the package installed.
Do the t-test for untransformed parameters2015-06-21T13:23:20ZJohannes Rankejranke@uni-bremen.de2015-06-20T23:46:51Zurn:sha1:6733555d7a9315c55001770bacc4c61c4d4f39d5Low-level generation of compiled models2015-06-20T01:59:56ZJohannes Rankejranke@uni-bremen.de2015-06-19T23:06:24Zurn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644
As it is unclear if and when ccSolve will be published on CRAN,
the generation, compilation and use of the C version of the
system of differential equations was developed for mkin, inspired and
guided by the code from the ccSolve package. Many thanks again to
Karline Soetaert for all of her work on this and other R packages.
Now all model types, including the Hockey-Stick model for the parent
compund and the IORE model for parent and/or metabolites can be compiled.
Make checking faster, testing is done by tests2015-05-18T14:58:44ZJohannes Rankejranke@uni-bremen.de2015-05-18T14:58:44Zurn:sha1:d337a9665d9261d18734d81edc8fe4b569635e71Clean up meta information2015-05-15T12:10:28ZJohannes Rankejranke@uni-bremen.de2015-05-15T12:10:28Zurn:sha1:93cad3b4b3a5cd1a2be74cb5ab3e1ca1a90270b6Merge branch 'master' into compile_odes2015-05-15T11:55:19ZJohannes Rankejranke@uni-bremen.de2015-05-15T11:55:19Zurn:sha1:6c65cba39dbca98caf3f8e69552b3454ec1721fc
Conflicts
(resolved manually, deleting code that I had
integrated into the RUnit tests for testing the
compiled version):
.gitignore
DESCRIPTION
inst/unitTests/runit.mkinerrmin.R
inst/unitTests/runit.mkinfit.R
tests/testthat/test_mkinpredict_SFO_SFO.R
vignettes/FOCUS_L.html
Quote FME package name in DESCRIPTION2015-05-15T09:52:54ZJohannes Rankejranke@uni-bremen.de2015-05-15T09:52:54Zurn:sha1:c4960b6d8f0fe84e9a05966d4208a89d780a887cCorrect the date2015-05-15T08:41:59ZJohannes Rankejranke@uni-bremen.de2015-05-15T08:41:59Zurn:sha1:9bb55ca2a59c8ce7d3b1069eec7a8aaf57e61df0Finished migration from RUnit to testthat2015-05-15T06:51:06ZJohannes Rankejranke@uni-bremen.de2015-05-15T06:49:40Zurn:sha1:656466946f093617ababebe5ec3b36809234112a