mkin/DESCRIPTION, branch v1.0.0Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.0.02021-02-03T17:18:19ZPrepare for v1.0.02021-02-03T17:18:19ZJohannes Rankejranke@uni-bremen.de2021-02-03T15:41:31Zurn:sha1:f0ef23a7598e5d19648ae4edc2b74e0fba27a41c
- Improve authorship and copyright information
- Prepare pkgdown config
- Remove dependence on saemix as we need the development version which
is not ready for CRAN
- Temporarily remove saemix interface to check code coverage of the rest
Make saemix and corresponding tests optional2021-01-06T19:38:29ZJohannes Rankejranke@uni-bremen.de2021-01-06T19:34:52Zurn:sha1:f99bdd8697c3bfbd432a320774a4692fd0e1241a
Address release critical check and test issues
nlme with varConstProp is released2020-12-10T16:53:50ZJohannes Rankejranke@uni-bremen.de2020-12-10T16:53:50Zurn:sha1:c60bb84cd907b7286f29a72eeb4e63dcc5ebf1ce
Also fix incompatibility with saem fits from earlier mkin versions
Updates after inline 0.3.17 has been released2020-12-07T10:43:26ZJohannes Rankejranke@uni-bremen.de2020-12-07T10:43:26Zurn:sha1:2663158c85fca9c088d1f8cfa3bc05ad1ac36f94Improved way to have persistent DLLs for mkinmod2020-11-27T20:19:19ZJohannes Rankejranke@uni-bremen.de2020-11-27T17:35:56Zurn:sha1:1e3fd1bef2a0ec1c8b73fcfefdd62fd3463bc87c
Depends on inline >= 0.16.2 (including the bug fixes from
eddelbuettel/inline#18), which provides 'moveDLL' to store the DLL for a
compiled function in a safe place in case the argument 'dll_dir' is
specified in the call to 'mkinmod'.
Huge thanks to Dirk @eddelbuettel for his review and support
for the work on the inline package.
Support storing mkinmod compiled code as CFunc objects2020-11-24T00:46:57ZJohannes Rankejranke@uni-bremen.de2020-11-20T18:43:46Zurn:sha1:503441b0a958c1df50df0ee7cfc3bde4ea1b1865
With automatic reloading in mkinfit and mkinpredict in case the
DLL is not loaded and the original DLL path has been cleaned up.
Depends on jranke/inline@974bdea04fcedfafaab231e6f359c88270b56cb9
See inline#13
Depend on parallel, doc improvements2020-11-19T14:41:24ZJohannes Rankejranke@uni-bremen.de2020-11-19T14:41:24Zurn:sha1:db9ae6a0c9cecb92048fde6f06af1da183c09b5f
By depending on parallel instead of importing it, functions to set up
and stop a cluster are always available when mkin is loaded.
The use of multicore processing in mmkin on Windows is now documented in
the help file, which brings mkin closer to a version 1.0 #9.
mkindsg class to hold groups of datasets2020-11-12T10:11:03ZJohannes Rankejranke@uni-bremen.de2020-11-12T10:04:45Zurn:sha1:7b807680b66269ff911df137f56e26775d84e283
- D24_2014 dataset on aerobic soil degradation of 2,4-D from the EU
assessment as mkindsg object with metadata
- f_time_norm_focus() to do time-step normalisation using the FOCUS
method
- focus_soil_moisture data with default moisture contents at pF1,
pF 2 and pF 2.5 for USDA soil types from FOCUS GW guidance
- Dataset generation scripts in inst/dataset_generation
- Depend on R >= 2.15.1 in order to facilitate the use of
utils::globalVariables()
Improve interface to experimental version of nlme2020-10-22T10:34:40ZJohannes Rankejranke@uni-bremen.de2020-10-22T10:34:40Zurn:sha1:4a6beafe6ca119500232ecda4b5672dd4a1877c2
The experimental nlme version in my drat repository contains the
variance function structure varConstProp which makes it possible to use
the two-component error model in generalized nonlinear models using
nlme::gnls() and in mixed effects models using nlme::nlme().
Reintroduce saemix helper functions2020-10-15T08:25:48ZJohannes Rankejranke@uni-bremen.de2020-10-15T08:25:48Zurn:sha1:954f7514144a281b73e9b47ac88a6b13e8799f31