mkin/DESCRIPTION, branch v1.0.1Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.0.12021-02-06T08:23:48ZAddress issue revealed by additional tests on CRAN2021-02-06T08:23:48ZJohannes Rankejranke@uni-bremen.de2021-02-06T08:23:48Zurn:sha1:df2beb74dcb6a65d6b066b55ccd7373dd79a6dab
Remove tests relying on non-convergence of the FOMC fit to the FOCUS A
dataset, as this is platform dependent. After the upgrade, the fit
converges on this system as well, although neither ATLAS is used, nor R
was configured disabling long doubles (these were the conditions under
which the tests failed on CRAN).
Documentation improvements, mainly fixing example code2021-02-04T10:41:06ZJohannes Rankejranke@uni-bremen.de2021-02-04T10:24:22Zurn:sha1:ac183c732317cf6ede26a2ee127604a407f0a6b3
The errors in the example code were in the \dontrun sections, so they
were not caught by CRAN checks. In addition, the static help files
generated with pkgdown were cached, so I noticed the errors only
after completely regenerating the documentation for version 1.0.0.
Prepare for v1.0.02021-02-03T17:18:19ZJohannes Rankejranke@uni-bremen.de2021-02-03T15:41:31Zurn:sha1:f0ef23a7598e5d19648ae4edc2b74e0fba27a41c
- Improve authorship and copyright information
- Prepare pkgdown config
- Remove dependence on saemix as we need the development version which
is not ready for CRAN
- Temporarily remove saemix interface to check code coverage of the rest
Make saemix and corresponding tests optional2021-01-06T19:38:29ZJohannes Rankejranke@uni-bremen.de2021-01-06T19:34:52Zurn:sha1:f99bdd8697c3bfbd432a320774a4692fd0e1241a
Address release critical check and test issues
nlme with varConstProp is released2020-12-10T16:53:50ZJohannes Rankejranke@uni-bremen.de2020-12-10T16:53:50Zurn:sha1:c60bb84cd907b7286f29a72eeb4e63dcc5ebf1ce
Also fix incompatibility with saem fits from earlier mkin versions
Updates after inline 0.3.17 has been released2020-12-07T10:43:26ZJohannes Rankejranke@uni-bremen.de2020-12-07T10:43:26Zurn:sha1:2663158c85fca9c088d1f8cfa3bc05ad1ac36f94Improved way to have persistent DLLs for mkinmod2020-11-27T20:19:19ZJohannes Rankejranke@uni-bremen.de2020-11-27T17:35:56Zurn:sha1:1e3fd1bef2a0ec1c8b73fcfefdd62fd3463bc87c
Depends on inline >= 0.16.2 (including the bug fixes from
eddelbuettel/inline#18), which provides 'moveDLL' to store the DLL for a
compiled function in a safe place in case the argument 'dll_dir' is
specified in the call to 'mkinmod'.
Huge thanks to Dirk @eddelbuettel for his review and support
for the work on the inline package.
Support storing mkinmod compiled code as CFunc objects2020-11-24T00:46:57ZJohannes Rankejranke@uni-bremen.de2020-11-20T18:43:46Zurn:sha1:503441b0a958c1df50df0ee7cfc3bde4ea1b1865
With automatic reloading in mkinfit and mkinpredict in case the
DLL is not loaded and the original DLL path has been cleaned up.
Depends on jranke/inline@974bdea04fcedfafaab231e6f359c88270b56cb9
See inline#13
Depend on parallel, doc improvements2020-11-19T14:41:24ZJohannes Rankejranke@uni-bremen.de2020-11-19T14:41:24Zurn:sha1:db9ae6a0c9cecb92048fde6f06af1da183c09b5f
By depending on parallel instead of importing it, functions to set up
and stop a cluster are always available when mkin is loaded.
The use of multicore processing in mmkin on Windows is now documented in
the help file, which brings mkin closer to a version 1.0 #9.
mkindsg class to hold groups of datasets2020-11-12T10:11:03ZJohannes Rankejranke@uni-bremen.de2020-11-12T10:04:45Zurn:sha1:7b807680b66269ff911df137f56e26775d84e283
- D24_2014 dataset on aerobic soil degradation of 2,4-D from the EU
assessment as mkindsg object with metadata
- f_time_norm_focus() to do time-step normalisation using the FOCUS
method
- focus_soil_moisture data with default moisture contents at pF1,
pF 2 and pF 2.5 for USDA soil types from FOCUS GW guidance
- Dataset generation scripts in inst/dataset_generation
- Depend on R >= 2.15.1 in order to facilitate the use of
utils::globalVariables()