mkin/GNUmakefile, branch nlmixrFitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=nlmixr2021-07-23T16:13:14ZMerge branch 'master' into nlmixr2021-07-23T16:13:14ZJohannes Rankejranke@uni-bremen.de2021-07-23T16:13:14Zurn:sha1:36b67cc7505a0a7f0960d4cb820c527f27e18f9c
After the merge, run make test and accept the new snapshot for the mixed
model fit for an nlme object
Rerun tests, use current vdiffr on travis2021-07-23T13:43:02ZJohannes Rankejranke@uni-bremen.de2021-07-23T13:43:02Zurn:sha1:297285ac86a74c1ceb517aac9eca46d07513c45dFully rebuild docs, rerun tests and check2021-02-15T16:36:12ZJohannes Rankejranke@uni-bremen.de2021-02-15T16:36:12Zurn:sha1:b9be19af5e3085216d0cd5af439332f631fa8b92Prepare for v1.0.02021-02-03T17:18:19ZJohannes Rankejranke@uni-bremen.de2021-02-03T15:41:31Zurn:sha1:f0ef23a7598e5d19648ae4edc2b74e0fba27a41c
- Improve authorship and copyright information
- Prepare pkgdown config
- Remove dependence on saemix as we need the development version which
is not ready for CRAN
- Temporarily remove saemix interface to check code coverage of the rest
Test plots on R-release and cache packages again2020-12-08T22:58:15ZJohannes Rankejranke@uni-bremen.de2020-12-08T22:56:14Zurn:sha1:df996535b0bb3077040abccf1c6e20bb4751d2ceUse preprocessed data for 2,4-D, update docs2020-11-12T10:57:37ZJohannes Rankejranke@uni-bremen.de2020-11-12T10:57:37Zurn:sha1:d1a94f2bb3742f50f3dd98a03d5fec338dd0cf65mkindsg class to hold groups of datasets2020-11-12T10:11:03ZJohannes Rankejranke@uni-bremen.de2020-11-12T10:04:45Zurn:sha1:7b807680b66269ff911df137f56e26775d84e283
- D24_2014 dataset on aerobic soil degradation of 2,4-D from the EU
assessment as mkindsg object with metadata
- f_time_norm_focus() to do time-step normalisation using the FOCUS
method
- focus_soil_moisture data with default moisture contents at pF1,
pF 2 and pF 2.5 for USDA soil types from FOCUS GW guidance
- Dataset generation scripts in inst/dataset_generation
- Depend on R >= 2.15.1 in order to facilitate the use of
utils::globalVariables()
Fix another URL, add devcheck target2020-10-08T07:57:03ZJohannes Rankejranke@uni-bremen.de2020-10-08T07:57:03Zurn:sha1:f6f7d67decd75b87a68f20c311a652b5b11237efFix issues for release2020-10-08T07:31:35ZJohannes Rankejranke@uni-bremen.de2020-10-08T07:31:35Zurn:sha1:bc3825ae2d12c18ea3d3caf17eb23c93fef180b8Improve tests2020-07-15T12:16:29ZJohannes Rankejranke@uni-bremen.de2020-07-15T12:11:25Zurn:sha1:39b0b93b5d15a3a0e9126f29c753e2fef75dc701
- Reduce significant digits for the objective function output in
mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my
system
- Add makefile target 'devtest' for testing with R-devel, in order
to fix problems showing up with R-devel on Travis