mkin/GNUmakefile, branch v0.9-36 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v0.9-36 2015-06-20T01:59:56Z Low-level generation of compiled models 2015-06-20T01:59:56Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T23:06:24Z urn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644 As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. Add a simple vignette with an evaluation of FOCUS D 2015-06-05T11:41:44Z Johannes Ranke jranke@uni-bremen.de 2015-06-05T11:41:44Z urn:sha1:58f46265cec1c3f51a6d2507e0f3e3b59243cc82 Include output in README, use mkinsub() in example code 2015-05-19T08:46:30Z Johannes Ranke jranke@uni-bremen.de 2015-05-19T08:46:30Z urn:sha1:e338c9a5a8da42e5f7b8940b96d150752767d75a Make checking faster, testing is done by tests 2015-05-18T14:58:44Z Johannes Ranke jranke@uni-bremen.de 2015-05-18T14:58:44Z urn:sha1:d337a9665d9261d18734d81edc8fe4b569635e71 Merge branch 'master' into compile_odes 2015-05-15T16:11:01Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T16:11:01Z urn:sha1:8294ab8932b299577f6a0db551a2ae9b401d3dd4 Remove missing files from svn before commiting to r-forge 2015-05-15T12:24:21Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T12:24:21Z urn:sha1:03e6ac6d5c5feb12a0942b59b0ef745952fc19f7 Merge branch 'master' into compile_odes 2015-05-15T11:55:19Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T11:55:19Z urn:sha1:6c65cba39dbca98caf3f8e69552b3454ec1721fc Conflicts (resolved manually, deleting code that I had integrated into the RUnit tests for testing the compiled version): .gitignore DESCRIPTION inst/unitTests/runit.mkinerrmin.R inst/unitTests/runit.mkinfit.R tests/testthat/test_mkinpredict_SFO_SFO.R vignettes/FOCUS_L.html Better description of the release procedure 2015-05-15T09:13:19Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T09:13:19Z urn:sha1:fcc28ed8bafd5c3b989033e8f1afefaae0c3fe41 Finished migration from RUnit to testthat 2015-05-15T06:51:06Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T06:49:40Z urn:sha1:656466946f093617ababebe5ec3b36809234112a Start of migration from RUnit to testthat 2015-05-13T22:21:47Z Johannes Ranke jranke@uni-bremen.de 2015-05-13T22:21:12Z urn:sha1:01c69fcff8c5a82b4c80faaeb44ff00827e792ca