mkin/GNUmakefile, branch v0.9-38 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v0.9-38 2015-06-23T13:15:41Z Remove Rplots.pdf that is being built by staticdocs 2015-06-23T13:15:41Z Johannes Ranke jranke@uni-bremen.de 2015-06-23T13:15:41Z urn:sha1:e2c33e96775d27edc40be4bcedc6077135e90b0a Also copy figures generated by README.Rmd for staticdocs index 2015-06-23T12:08:18Z Johannes Ranke jranke@uni-bremen.de 2015-06-23T12:08:18Z urn:sha1:7b2d21afb970fdc23c5fbfb2404245f2a9f22257 Rename the check-no-vignettes target to quickcheck 2015-06-23T09:57:53Z Johannes Ranke jranke@uni-bremen.de 2015-06-23T09:57:53Z urn:sha1:fcef4ecc315bdd46b4ea9c680bd7a42ed0103990 and do not check using the --as-cran option to skip the check for CRAN incoming feasibility. Another reorganisation of vignette building by GNUmakefile 2015-06-22T20:09:07Z Johannes Ranke jranke@uni-bremen.de 2015-06-22T20:09:07Z urn:sha1:72846ba8a3d75eed97901670eafee36b84f359df Watch the vignettes built locally as well for building 2015-06-22T18:51:24Z Johannes Ranke jranke@uni-bremen.de 2015-06-22T18:51:24Z urn:sha1:4ecfa9802a4f0ddfcb2d23bcad2766ce6d2a5fe8 Version bump, correct benchmark in vignette/compiled_models 2015-06-22T18:31:22Z Johannes Ranke jranke@uni-bremen.de 2015-06-22T04:09:00Z urn:sha1:01d9de6ff165c64ffc4366f2eeb3d2649b5c74c0 Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed. Low-level generation of compiled models 2015-06-20T01:59:56Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T23:06:24Z urn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644 As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. Add a simple vignette with an evaluation of FOCUS D 2015-06-05T11:41:44Z Johannes Ranke jranke@uni-bremen.de 2015-06-05T11:41:44Z urn:sha1:58f46265cec1c3f51a6d2507e0f3e3b59243cc82 Include output in README, use mkinsub() in example code 2015-05-19T08:46:30Z Johannes Ranke jranke@uni-bremen.de 2015-05-19T08:46:30Z urn:sha1:e338c9a5a8da42e5f7b8940b96d150752767d75a Make checking faster, testing is done by tests 2015-05-18T14:58:44Z Johannes Ranke jranke@uni-bremen.de 2015-05-18T14:58:44Z urn:sha1:d337a9665d9261d18734d81edc8fe4b569635e71