mkin/GNUmakefile, branch v1.2.6Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.2.62023-05-19T15:10:16ZPrepare release of v1.2.42023-05-19T15:10:16ZJohannes Rankejranke@uni-bremen.de2023-05-19T15:08:43Zurn:sha1:cf54ccca37d27480dbf8d59eb027300518f7ad75
- Update DESCRIPTION
- Update Makefile to document how to use R-patched
- Remove markup from two URLs to avoid CRAN NOTE
- Switch two vignettes from html_document to html_vignette to save space
in the docs directory, also avoiding a CRAN NOTE
- Complete rebuild of pkgdown docs for release
Add coverage target for local coverage report2023-04-16T11:42:08ZJohannes Rankejranke@uni-bremen.de2023-04-16T11:41:25Zurn:sha1:99b4554a1ce657295b1358509110f3d02155a913
I get almost 90% when testing locally
Fix path, build target for prebuilt pdf vignettes2023-02-17T07:19:46ZJohannes Rankejranke@uni-bremen.de2023-02-17T07:19:46Zurn:sha1:c7cc91c47f9b074521fcaaa05a020525d719c2d9Prebuilt PDF vignettes, summary_listing2023-01-09T05:22:04ZJohannes Rankejranke@uni-bremen.de2023-01-09T05:22:04Zurn:sha1:24eb77216700cf8b2f2bde3abad84c1f83f9e32aRename template folder, create format2022-12-19T11:38:07ZJohannes Rankejranke@uni-bremen.de2022-12-19T11:31:56Zurn:sha1:886c9ef013124aa954d960c655b349b5340ff154
Instead of rmarkdown::pdf_document, mkin::hierarchical_kinetics is used
as a document format in the template. In this way, the template file can
be freed from some R code and yaml options that the average user does
not have to be aware of.
Template and spreadsheet for hierarchical kinetics2022-12-19T05:37:32ZJohannes Rankejranke@uni-bremen.de2022-12-19T05:37:32Zurn:sha1:0023df3c31fac29b5f9337ecd732a5dfd4d51a2d
The template only shows parent data evaluation without covariate models
for now. The spreadsheet will also be useful for unit testing of the
read_spreadsheet function.
Avoid error message at testthat termination2022-12-02T12:25:56ZJohannes Rankejranke@uni-bremen.de2022-12-02T12:25:56Zurn:sha1:240568bf65f2257f1185927ac811dde18aeabe1d
https://github.com/r-lib/processx/issues/236
Automatic starting parameters for saem.mmkin2022-11-14T19:03:42ZJohannes Rankejranke@uni-bremen.de2022-11-14T19:03:42Zurn:sha1:21ad91256dc29423bd905de5c298fd23862b1f3b
For the case of mkin transformations. This gives faster convergence,
and appears to avoid problems with numeric ODE solutions
Improve multistart documentation, bugfix2022-09-16T19:06:54ZJohannes Rankejranke@uni-bremen.de2022-09-16T19:06:54Zurn:sha1:fd205e13061de8abc595d266f3b0c7650773d442
- Split out llhist and parhist documentation
- Add example code for multistart
- Create a multistart vignette, because the example code fails when run
by pkgdown
- Fix multistart for the case of mkin transformations in the saem fit
Update Makefile2022-07-22T13:41:17ZJohannes Rankejranke@uni-bremen.de2022-07-22T13:41:17Zurn:sha1:b16e84264908b85bf02703a72a1fba9135c5c3de