mkin/NAMESPACE, branch devFitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=dev2024-04-27T17:23:42ZFix bug in R/create_deg_func.R2024-04-27T17:23:42ZJohannes Rankejranke@uni-bremen.de2024-04-27T17:22:10Zurn:sha1:e18c8da322ddb11105b7fdf93e9dd538673fb946
Closes #13
Merge branch 'main' into custom_lsoda_call2023-02-13T04:19:08ZJohannes Rankejranke@uni-bremen.de2023-02-13T04:19:08Zurn:sha1:8d1a84ac2190538ed3bac53a303064e281595868Prebuilt PDF vignettes, summary_listing2023-01-09T05:22:04ZJohannes Rankejranke@uni-bremen.de2023-01-09T05:22:04Zurn:sha1:24eb77216700cf8b2f2bde3abad84c1f83f9e32aRename template folder, create format2022-12-19T11:38:07ZJohannes Rankejranke@uni-bremen.de2022-12-19T11:31:56Zurn:sha1:886c9ef013124aa954d960c655b349b5340ff154
Instead of rmarkdown::pdf_document, mkin::hierarchical_kinetics is used
as a document format in the template. In this way, the template file can
be freed from some R code and yaml options that the average user does
not have to be aware of.
We get about 25% performance gain2022-11-16T08:15:36ZJohannes Rankejranke@uni-bremen.de2022-11-16T08:15:36Zurn:sha1:51d63256a7b3020ee11931d61b4db97b9ded02c0
with the custom lsoda call, avoiding repeated getNativeSymbolInfo calls.
It's just that we should not be calling foreign functions from different
packages, because the may change without notice. Using
getNativeSymbolInfo for "call_lsoda" avoids the CRAN note, and a similar
call could probably be used for "unlock_solver", avoiding the NOTE in
checks for cran, but we should not do this in a CRAN package.
Import saemix for easier profiling, update online docs2022-11-15T07:01:52ZJohannes Rankejranke@uni-bremen.de2022-11-15T07:01:52Zurn:sha1:679cf716192cdfd91dfd232578cbd4e30d7eac12Add tex_listing()2022-11-01T19:32:54ZJohannes Rankejranke@uni-bremen.de2022-11-01T19:32:54Zurn:sha1:65bb1c5587801444a6b47a344b285ec5ca06c048Add read_spreadsheet2022-11-01T16:26:05ZJohannes Rankejranke@uni-bremen.de2022-11-01T16:26:05Zurn:sha1:b53ca24f26c759a8ecf5e00f791a4134dd1a926cImproved printing for illparms()2022-11-01T08:46:33ZJohannes Rankejranke@uni-bremen.de2022-11-01T08:46:33Zurn:sha1:fd4bd411df739903279d8b52faa19d5059afbda7
For the case of single fits and no ill-defined parameters found
Fix R CMD check2022-10-31T16:01:58ZJohannes Rankejranke@uni-bremen.de2022-10-31T16:01:58Zurn:sha1:300aa6ec27529f46deda07874566dc8fcee4e6e7