mkin/R, branch v0.9-38 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v0.9-38 2015-06-23T09:17:27Z Hopefully fix compiling on Solaris, verbose option 2015-06-23T09:17:27Z Johannes Ranke jranke@uni-bremen.de 2015-06-23T09:17:27Z urn:sha1:548b67e5d54e78150cfc6474ad129af9408f4997 - Only declare the time variable in the C code when needed in the derivatives. - Add the option to show verbose output of cfunction() when compiling the model to a shared library. Do the t-test for untransformed parameters 2015-06-21T13:23:20Z Johannes Ranke jranke@uni-bremen.de 2015-06-20T23:46:51Z urn:sha1:6733555d7a9315c55001770bacc4c61c4d4f39d5 Suppress compiler warning for sometimes unused time variable 2015-06-20T15:52:51Z Johannes Ranke johannes.ranke@jrwb.de 2015-06-20T15:52:51Z urn:sha1:35ff2c2e7154b5d66a6b33e77d3f4f40282df3c2 Low-level generation of compiled models 2015-06-20T01:59:56Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T23:06:24Z urn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644 As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. Make mkinmod quiet in tests 2015-05-15T12:04:49Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T12:04:49Z urn:sha1:ffc12f79fdb283bc59f073208c883b84271be121 Add a vignette showing the performance of compiled models 2015-04-17T22:06:38Z Johannes Ranke jranke@uni-bremen.de 2015-04-17T22:06:38Z urn:sha1:a26b44d15c11ebb41083fc2efab0cc91a027b55b Make compiled FOMC and DFOP models work 2015-04-17T14:54:42Z Johannes Ranke jranke@uni-bremen.de 2015-04-17T14:42:33Z urn:sha1:558b96b4e3cfd1845677620976f09bad2c641ecb - Many thanks @karlines for the hint in ccSolve#1 how to declare the time variable and for writing the ccSolve package in the first place - Add tests for the compiled versions of the FOMC and DFOP models Order of parameters needs to be right for compiled models 2015-04-16T11:21:36Z Johannes Ranke jranke@uni-bremen.de 2015-04-16T11:21:36Z urn:sha1:e610eb47f460bdb16a1160c9e4cc6fd7051d2546 Update copyright header, improve documentation of solution_type 2015-04-16T09:27:56Z Johannes Ranke jranke@uni-bremen.de 2015-04-16T09:06:39Z urn:sha1:c504e823809aa8a299ed5326a22505f82d891ce5 Check compiled mkinmod versions in examples and tests 2015-04-16T09:00:53Z Johannes Ranke jranke@uni-bremen.de 2015-04-16T09:00:53Z urn:sha1:ec9e65053b214fa30e8b947ccbc47930eeaa01a4 Tests all pass (Linux)