mkin/R, branch v0.9-39 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v0.9-39 2015-06-26T12:40:33Z Fix x axis scaling in mkinparplot 2015-06-26T12:40:33Z Johannes Ranke jranke@uni-bremen.de 2015-06-26T12:40:33Z urn:sha1:ab93a4ea8f111949b6d99a79eae54bded86215dc Subsetting and plotting for mmkin objects 2015-06-26T08:43:55Z Johannes Ranke jranke@uni-bremen.de 2015-06-26T06:50:13Z urn:sha1:4c69847346a9c254e4e803b6987a63e3fd9c14ae Including documentation and documentation improvements for mmkin(). Fix fitting with parLapply, doc fix 2015-06-25T09:43:49Z Johannes Ranke jranke@uni-bremen.de 2015-06-25T09:39:20Z urn:sha1:e9931e61c253eb9379864b0a4dc7e37e39b6738d Add mmkin for testing 2015-06-25T09:32:34Z Johannes Ranke jranke@uni-bremen.de 2015-06-25T09:32:34Z urn:sha1:c3d6dde60cb368f403ffe0285db27e218f669990 Hopefully fix compiling on Solaris, verbose option 2015-06-23T09:17:27Z Johannes Ranke jranke@uni-bremen.de 2015-06-23T09:17:27Z urn:sha1:548b67e5d54e78150cfc6474ad129af9408f4997 - Only declare the time variable in the C code when needed in the derivatives. - Add the option to show verbose output of cfunction() when compiling the model to a shared library. Do the t-test for untransformed parameters 2015-06-21T13:23:20Z Johannes Ranke jranke@uni-bremen.de 2015-06-20T23:46:51Z urn:sha1:6733555d7a9315c55001770bacc4c61c4d4f39d5 Suppress compiler warning for sometimes unused time variable 2015-06-20T15:52:51Z Johannes Ranke johannes.ranke@jrwb.de 2015-06-20T15:52:51Z urn:sha1:35ff2c2e7154b5d66a6b33e77d3f4f40282df3c2 Low-level generation of compiled models 2015-06-20T01:59:56Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T23:06:24Z urn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644 As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. Make mkinmod quiet in tests 2015-05-15T12:04:49Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T12:04:49Z urn:sha1:ffc12f79fdb283bc59f073208c883b84271be121 Add a vignette showing the performance of compiled models 2015-04-17T22:06:38Z Johannes Ranke jranke@uni-bremen.de 2015-04-17T22:06:38Z urn:sha1:a26b44d15c11ebb41083fc2efab0cc91a027b55b