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<title>mkin/R, branch v0.9.50.3</title>
<subtitle>Fitting kinetic models to chemical degradation data (also on github)</subtitle>
<id>https://cgit.jrwb.de/mkin/atom?h=v0.9.50.3</id>
<link rel='self' href='https://cgit.jrwb.de/mkin/atom?h=v0.9.50.3'/>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/'/>
<updated>2020-10-08T07:31:35Z</updated>
<entry>
<title>Fix issues for release</title>
<updated>2020-10-08T07:31:35Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-10-08T07:31:35Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=bc3825ae2d12c18ea3d3caf17eb23c93fef180b8'/>
<id>urn:sha1:bc3825ae2d12c18ea3d3caf17eb23c93fef180b8</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Avoid dep on dev version of saemix for release</title>
<updated>2020-10-08T06:11:37Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-10-08T06:11:37Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=c7635af214729d2dc15dd8fbee2ebe6bc64493a4'/>
<id>urn:sha1:c7635af214729d2dc15dd8fbee2ebe6bc64493a4</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Merge branch 'master' of kolab.jrwb.de:mkin</title>
<updated>2020-09-01T06:06:20Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-09-01T06:06:20Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=36b534d7cbd3b98f0caa8e801beac1c55093f6c7'/>
<id>urn:sha1:36b534d7cbd3b98f0caa8e801beac1c55093f6c7</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Back-calculated DT50 values for biphasic models</title>
<updated>2020-09-01T06:05:43Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-09-01T06:05:43Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=6fbb2341f998b322f21fe4e7cd655e0ca61cdbe4'/>
<id>urn:sha1:6fbb2341f998b322f21fe4e7cd655e0ca61cdbe4</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Require upcoming nlme version, remove anova.nlme.mmkin</title>
<updated>2020-07-20T19:02:28Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-07-20T19:02:28Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=2f492ce2acf21610a7b15ce5d1878cf0f2ae5b4d'/>
<id>urn:sha1:2f492ce2acf21610a7b15ce5d1878cf0f2ae5b4d</id>
<content type='text'>
The method is no longer necessary, now that Bug 17761 is fixed upstream
https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761
</content>
</entry>
<entry>
<title>mkinfit: Ignore unused components of state.ini</title>
<updated>2020-07-17T14:27:46Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-07-17T14:27:46Z</published>
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<id>urn:sha1:a7e209b553e2e99ffc9aa2b003f9b73b9ac4b985</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Improve tests</title>
<updated>2020-07-15T12:16:29Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-07-15T12:11:25Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=39b0b93b5d15a3a0e9126f29c753e2fef75dc701'/>
<id>urn:sha1:39b0b93b5d15a3a0e9126f29c753e2fef75dc701</id>
<content type='text'>
- Reduce significant digits for the objective function output in
mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my
system
- Add makefile target 'devtest' for testing with R-devel, in order
to fix problems showing up with R-devel on Travis
</content>
</entry>
<entry>
<title>Improve handling of (partially) failing fits</title>
<updated>2020-07-15T10:30:39Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-07-15T10:30:39Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=9f8e1eb33b586beb7e889212bdababa081b6ff67'/>
<id>urn:sha1:9f8e1eb33b586beb7e889212bdababa081b6ff67</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Use try() within mmkin</title>
<updated>2020-07-15T09:49:34Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-07-15T09:49:34Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=46763edbd1c9b14cff15c53d96312a7930225704'/>
<id>urn:sha1:46763edbd1c9b14cff15c53d96312a7930225704</id>
<content type='text'>
This keeps mmkin from stopping if one of the fits fails. Instead,
a try-error is assigned to the respective position in the mmkin object.
</content>
</entry>
<entry>
<title>Fix a bug, update for current vdiffr</title>
<updated>2020-06-15T07:05:27Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-06-15T07:05:27Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=068b168d78c9550a77514e0c39923f8d40b48b03'/>
<id>urn:sha1:068b168d78c9550a77514e0c39923f8d40b48b03</id>
<content type='text'>
Vignette FOCUS_L failed as I had introduced a bug in the handling of
warnings.

Current vdiffr only runs visual tests if R &lt; 4.1.0, skipping r-devel for now,
see https://github.com/r-lib/vdiffr/commit/630a29d013361fd63fea242f531e2db6aef37919
</content>
</entry>
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