mkin/R, branch v1.0.5Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.0.52021-09-15T14:54:49ZFix Open EFSA URL, changelog for 1.0.52021-09-15T14:54:49ZJohannes Rankejranke@uni-bremen.de2021-09-15T14:54:49Zurn:sha1:2e77bf144a81852302571009b1fcd41f021eca4c
The EFSA URL failed on winbuilder because some cookie sets a different
domain, so I am now using \href{} with the full link as link text instead
of \url{}
Correction of the dimethenamid dataset2021-09-15T09:22:36ZJohannes Rankejranke@uni-bremen.de2021-09-15T09:22:36Zurn:sha1:35eaf4f7bac89b249ff488e4e3021d4226ed9e23
The data given in previous mkin versions for "Borstel 2" (Staudenmaier
2013) are in fact a subset of the "Borstel 1" data, with the "Borstel 2"
data simply being further analysed for isomer composition by
Staudenmaier (2013).
While correcting this, the URL of the RAR published by EFSA was
updated, as the EFSA Register of Questions was replaced by the
Open EFSA portal.
This also affects the recent publication in "Environments" [1], where
these two datasets were pooled. However, the influence on the final
results can be expected to be minimal. Out of the 16 observations for
the Borstel soil, five were erroneously duplicated which just changes
the weight of the different sampling points and modifies the variance.
The conclusions of the publication are qualitative and are not
considered to be affected.
[1] https://doi.org/10.3390/environments8080071
Version 1.0.4 published yesterday2021-04-21T11:11:47ZJohannes Rankejranke@uni-bremen.de2021-04-21T11:11:47Zurn:sha1:c74b79c983fe9fc872bac1262040e82f16049477Bug fix in plot.mkinfit2021-03-31T17:42:17ZJohannes Rankejranke@uni-bremen.de2021-03-31T17:42:17Zurn:sha1:3a5463672c297b37c3c9135c8b144c48744c05d0
In residual plots, use xlab and xlim if appropriate
Reset graphical parameters with on.exit()2021-02-24T13:58:04ZJohannes Rankejranke@uni-bremen.de2021-02-24T13:46:10Zurn:sha1:64fa10032f99490a5998589161574109484ee769
plot.mixed.mmkin did not reset graphical parameters at all. The other
plotting functions did not use on.exit, so this change should make the
use of the plotting functions safer.
Improve README, introductory vignette and some other docs2021-02-15T14:20:53ZJohannes Rankejranke@uni-bremen.de2021-02-15T13:08:13Zurn:sha1:a9427a09abdf7ce9aaeae7c7190f90c8f2e5ef52
Also bump version to 1.0.3.
Update for gmkin 0.6.122021-02-13T05:54:46ZJohannes Rankejranke@uni-bremen.de2021-02-13T05:54:46Zurn:sha1:3532d769c1a3561de37e0d10cffa9801fe9df7c6
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin
Documentation improvements, mainly fixing example code2021-02-04T10:41:06ZJohannes Rankejranke@uni-bremen.de2021-02-04T10:24:22Zurn:sha1:ac183c732317cf6ede26a2ee127604a407f0a6b3
The errors in the example code were in the \dontrun sections, so they
were not caught by CRAN checks. In addition, the static help files
generated with pkgdown were cached, so I noticed the errors only
after completely regenerating the documentation for version 1.0.0.
Prepare for v1.0.02021-02-03T17:18:19ZJohannes Rankejranke@uni-bremen.de2021-02-03T15:41:31Zurn:sha1:f0ef23a7598e5d19648ae4edc2b74e0fba27a41c
- Improve authorship and copyright information
- Prepare pkgdown config
- Remove dependence on saemix as we need the development version which
is not ready for CRAN
- Temporarily remove saemix interface to check code coverage of the rest
Some more plotting improvements2021-01-25T16:55:06ZJohannes Rankejranke@uni-bremen.de2021-01-25T16:55:06Zurn:sha1:0280b9c8dcc77cb1d22964485462b27a56b96eca