mkin/R, branch v1.2.3Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.2.32023-04-16T15:47:10ZSuppress a warning about a path "(embedding)"2023-04-16T15:47:10ZJohannes Rankejranke@uni-bremen.de2023-04-16T15:47:10Zurn:sha1:4140236154f35ccd99b22551947269348dc748dbIncrease test coverage2023-04-15T18:00:00ZJohannes Rankejranke@uni-bremen.de2023-04-15T18:00:00Zurn:sha1:f215080efba4097ccdaa2d1208edd36c26d7978a
Also, using mkin analytical solutions for more than one observed
variable is not supported (but could be if out_values would be
reordered).
Make predefined symbols safer2023-04-15T13:35:06ZJohannes Rankejranke@uni-bremen.de2023-04-15T13:35:06Zurn:sha1:b0b710ee9f9bb9bbe9708676d0c5822465e02203
We still need to create a parallel processing cluster _after_ creating a
compiled model that is moved to a user defined location, at least I did
not find another way to make it work. This is not a problem with
parallel processing without a cluster, which is not available on
Windows.
Don't try(mkinpredict), it would still error later2023-04-15T12:43:07ZJohannes Rankejranke@uni-bremen.de2023-04-15T12:43:07Zurn:sha1:50ea6d11f8c79218c98ee8ae56d8bdcd42cc703aMake using predefined symbols optional2023-04-15T06:41:37ZJohannes Rankejranke@uni-bremen.de2023-04-15T06:41:37Zurn:sha1:f20a9d81cbcd514ed629b69364cd85a72ac06e95
I got crashes under some circumstances when using symbols stored in the
mkinmod object. One such circumstance was the use of a moved DLL in
combination with parallel computing on a cluster. As I cannot exactly
define at the moment when this happens, it is better to make this
an opt in.
Dont fix mean_degparms if it does not exist2023-04-14T18:26:50ZJohannes Rankejranke@uni-bremen.de2023-04-14T18:26:50Zurn:sha1:19016037302814387799426fc40b318ee54b07f0Fix a bug with moved DLLs and current deSolve2023-04-06T06:06:34ZJohannes Rankejranke@uni-bremen.de2023-04-06T06:06:34Zurn:sha1:43d15fe2c2ecc570ad5edfba0e75ae9b22ac2080
In mkinmod, dll_info was not included in the returned model object
in the case that the DLL was moved to a user defined directory.
This is now fixed.
Deal with covariates in summary for saem.mmkin objects2023-04-02T14:58:56ZJohannes Rankejranke@uni-bremen.de2023-04-02T14:58:56Zurn:sha1:0311f0658a276fab84e78c060b73c0b46c33b100Support covariates in endpoints()2023-03-23T15:45:52ZJohannes Rankejranke@uni-bremen.de2023-03-23T15:42:31Zurn:sha1:a8514e92fbb23d60db686ddf153592fb28c48a77Merge branch 'main' into covariate_parms_and_endpoints2023-03-22T22:00:18ZJohannes Rankejranke@uni-bremen.de2023-03-22T22:00:18Zurn:sha1:9e7aa351b30a0dc9b1e6e14da751c7f42a7587dd