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<title>mkin/docs/reference/index.html, branch v0.9.49.10</title>
<subtitle>Fitting kinetic models to chemical degradation data (also on github)</subtitle>
<id>https://cgit.jrwb.de/mkin/atom?h=v0.9.49.10</id>
<link rel='self' href='https://cgit.jrwb.de/mkin/atom?h=v0.9.49.10'/>
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<updated>2020-04-17T22:38:26Z</updated>
<entry>
<title>Avoid assignment to .GlobalEnv for CRAN</title>
<updated>2020-04-17T22:38:26Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-17T22:38:26Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=518a801a9a0f1aef36df1f201b6a3f0f3a84b779'/>
<id>urn:sha1:518a801a9a0f1aef36df1f201b6a3f0f3a84b779</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Include random effects in starting parameters</title>
<updated>2020-04-15T17:00:06Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-15T16:13:04Z</published>
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<id>urn:sha1:42171ba55222383a0d47e5aacd46a972819e7812</id>
<content type='text'>
- mean_degparms() now optionally returns starting values for fixed and
  random effects, which makes it possible to obtain acceptable fits
  also in more difficult cases (with more parameters)
- Fix the anova method, as it is currently not enough to inherit from
  lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761
- Show fit information, and per default also errmin information
  in plot.nlme.mmkin()
- Examples for nlme.mmkin: Decrease tolerance and increase the number of
  iterations in the PNLS step in order to be able to fit FOMC-SFO and
  DFOP-SFO
</content>
</entry>
<entry>
<title>A plot method for nlme.mmkin fits</title>
<updated>2020-04-14T23:51:55Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-14T23:27:02Z</published>
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<id>urn:sha1:082be7baa35d7e8131a70ca8cc061d90e08fa584</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Improve nlme function docs</title>
<updated>2020-04-10T06:26:44Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-10T06:26:44Z</published>
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<id>urn:sha1:7777ff3b019e54364947ff393e2dab782d7cfe3c</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Static documentation rebuilt by pkgdown</title>
<updated>2020-04-04T15:20:06Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-04T14:50:20Z</published>
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<id>urn:sha1:a98733db782ce3e9446dda187c34703f61916806</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Remove unused FME package from DESCRIPTION text</title>
<updated>2020-01-09T16:50:23Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-01-09T16:50:23Z</published>
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<id>urn:sha1:70fe6d14e27fa8fb0634856ecc45a27f4f689d88</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Consistently use "two-component error model"</title>
<updated>2019-12-09T14:21:11Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2019-12-09T14:21:11Z</published>
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<id>urn:sha1:7ea467e0e0ba5bf51540b26e197869a58ed1a092</id>
<content type='text'>
instead of "two component error model"
</content>
</entry>
<entry>
<title>Calculate Akaike weights</title>
<updated>2019-11-13T20:15:35Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2019-11-13T20:15:35Z</published>
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<id>urn:sha1:c3700bec3a704660d3ade7a54c56b7084beb02b4</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Likelihood ratio test for mmkin columns with two fits</title>
<updated>2019-11-13T10:05:39Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2019-11-13T10:05:39Z</published>
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<id>urn:sha1:f6385b071cee2c261da28bf98fd1599da1a30ddb</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Add a lack-of-fit test</title>
<updated>2019-11-09T00:05:51Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2019-11-09T00:05:51Z</published>
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<id>urn:sha1:20b9c584e7c43ecbb708459e531c24a1a4751e17</id>
<content type='text'>
- Switch an example dataset in the test setup to a dataset with
replicates, adapt tests
- Skip the test for lrtest with an update specification as it does not
only fail when pkgdown generates static help pages, but also in testthat
</content>
</entry>
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