mkin/docs/reference/nlme.html, branch v1.0.0 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v1.0.0 2021-02-03T17:18:19Z Prepare for v1.0.0 2021-02-03T17:18:19Z Johannes Ranke jranke@uni-bremen.de 2021-02-03T15:41:31Z urn:sha1:f0ef23a7598e5d19648ae4edc2b74e0fba27a41c - Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest Update online docs for release version 2020-10-15T10:53:23Z Johannes Ranke jranke@uni-bremen.de 2020-10-15T10:53:23Z urn:sha1:5b1179f0daff9077e1370065f9b9f03a2d0e0450 Add docs generated using released version 0.9.52 2020-05-27T05:12:51Z Johannes Ranke jranke@uni-bremen.de 2020-05-27T05:12:51Z urn:sha1:b5ee48a86e4b1d4c05aaadb80b44954e2e994ebc Use all cores per default, confint tolerance 2020-05-26T16:52:01Z Johannes Ranke jranke@uni-bremen.de 2020-05-26T16:38:51Z urn:sha1:675a733fa2acc08daabb9b8b571c7d658f281f73 Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits. Test markdown link, article update due to .rmd extension 2020-05-14T15:10:59Z Johannes Ranke jranke@uni-bremen.de 2020-05-14T15:10:59Z urn:sha1:b6e278759127dab5bb78bc3016926a66e8a9758f Update vignettes and docs 2020-05-12T14:34:00Z Johannes Ranke jranke@uni-bremen.de 2020-05-12T14:34:00Z urn:sha1:6211f3ef4995657798686d8d4ab43ed9406e8a08 Documentation improvements, rebuild static docs 2020-05-12T06:36:31Z Johannes Ranke jranke@uni-bremen.de 2020-05-12T06:07:07Z urn:sha1:9ac853c7ceece333099021974025d07e75be2b33 Another overhaul of analytical solutions 2020-05-07T20:14:19Z Johannes Ranke jranke@uni-bremen.de 2020-05-07T20:13:33Z urn:sha1:92bd33824bde6b6b21bfc7e30953092a74d3cce5 Still in preparation for analytical solutions of coupled models Include random effects in starting parameters 2020-04-15T17:00:06Z Johannes Ranke jranke@uni-bremen.de 2020-04-15T16:13:04Z urn:sha1:42171ba55222383a0d47e5aacd46a972819e7812 - mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO A plot method for nlme.mmkin fits 2020-04-14T23:51:55Z Johannes Ranke jranke@uni-bremen.de 2020-04-14T23:27:02Z urn:sha1:082be7baa35d7e8131a70ca8cc061d90e08fa584