mkin/docs/reference/nlme.mmkin.html, branch v1.0.1 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v1.0.1 2021-02-04T10:41:06Z Documentation improvements, mainly fixing example code 2021-02-04T10:41:06Z Johannes Ranke jranke@uni-bremen.de 2021-02-04T10:24:22Z urn:sha1:ac183c732317cf6ede26a2ee127604a407f0a6b3 The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0. Prepare for v1.0.0 2021-02-03T17:18:19Z Johannes Ranke jranke@uni-bremen.de 2021-02-03T15:41:31Z urn:sha1:f0ef23a7598e5d19648ae4edc2b74e0fba27a41c - Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest Update online docs for release version 2020-10-15T10:53:23Z Johannes Ranke jranke@uni-bremen.de 2020-10-15T10:53:23Z urn:sha1:5b1179f0daff9077e1370065f9b9f03a2d0e0450 Add docs generated using released version 0.9.52 2020-05-27T05:12:51Z Johannes Ranke jranke@uni-bremen.de 2020-05-27T05:12:51Z urn:sha1:b5ee48a86e4b1d4c05aaadb80b44954e2e994ebc First working version of saemix helper functions 2020-05-25T11:01:23Z Johannes Ranke jranke@uni-bremen.de 2020-05-25T11:01:23Z urn:sha1:9f9336d59e68690472888bfdeb12944176d7d272 saemix_data depends on a development version of saemix, see pull request saemixdevelopment/saemixextension#2 Update vignettes and docs 2020-05-12T14:34:00Z Johannes Ranke jranke@uni-bremen.de 2020-05-12T14:34:00Z urn:sha1:6211f3ef4995657798686d8d4ab43ed9406e8a08 Documentation improvements, rebuild static docs 2020-05-12T06:36:31Z Johannes Ranke jranke@uni-bremen.de 2020-05-12T06:07:07Z urn:sha1:9ac853c7ceece333099021974025d07e75be2b33 Avoid assignment to .GlobalEnv for CRAN 2020-04-17T22:38:26Z Johannes Ranke jranke@uni-bremen.de 2020-04-17T22:38:26Z urn:sha1:518a801a9a0f1aef36df1f201b6a3f0f3a84b779 Adapt endpoint() to also work for nlme.mmkin objects 2020-04-15T18:42:29Z Johannes Ranke jranke@uni-bremen.de 2020-04-15T18:42:29Z urn:sha1:d518c4cfa22994db5ba81a6b01c6cb4c4186872e Include random effects in starting parameters 2020-04-15T17:00:06Z Johannes Ranke jranke@uni-bremen.de 2020-04-15T16:13:04Z urn:sha1:42171ba55222383a0d47e5aacd46a972819e7812 - mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO