mkin/docs/reference/parms.html, branch v1.1.0Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.1.02022-03-07T13:55:21ZRemove nlmixr interface for release of mkin 1.1.02022-03-07T13:55:21ZJohannes Rankejranke@uni-bremen.de2022-03-07T11:03:40Zurn:sha1:7035cde3a53781721fe15a8893fdf328c789bdd2
I am postponing my attempts to get the nlmixr interface to CRAN, given
some problems with nlmixr using R-devel under Windows, see
https://github.com/nlmixrdevelopment/nlmixr/issues/596
and
https://github.com/r-hub/rhub/issues/512,
which is fixed by the removal of nlmixr from the testsuite.
For the tests to be more platform independent, the biphasic mixed
effects models test dataset was defined in a way that fitting
should be more robust (less ill-defined).
Make tests more platform independent, update docs2022-03-02T17:03:54ZJohannes Rankejranke@uni-bremen.de2022-03-02T17:03:54Zurn:sha1:2bb59c88d49b193f278916ad9cc4de83c0de9604Bug fix in plot.mkinfit2021-03-31T17:42:17ZJohannes Rankejranke@uni-bremen.de2021-03-31T17:42:17Zurn:sha1:3a5463672c297b37c3c9135c8b144c48744c05d0
In residual plots, use xlab and xlim if appropriate
Improve README, introductory vignette and some other docs2021-02-15T14:20:53ZJohannes Rankejranke@uni-bremen.de2021-02-15T13:08:13Zurn:sha1:a9427a09abdf7ce9aaeae7c7190f90c8f2e5ef52
Also bump version to 1.0.3.
Prepare for v1.0.02021-02-03T17:18:19ZJohannes Rankejranke@uni-bremen.de2021-02-03T15:41:31Zurn:sha1:f0ef23a7598e5d19648ae4edc2b74e0fba27a41c
- Improve authorship and copyright information
- Prepare pkgdown config
- Remove dependence on saemix as we need the development version which
is not ready for CRAN
- Temporarily remove saemix interface to check code coverage of the rest
Update online docs for release version2020-10-15T10:53:23ZJohannes Rankejranke@uni-bremen.de2020-10-15T10:53:23Zurn:sha1:5b1179f0daff9077e1370065f9b9f03a2d0e0450Add docs generated using released version 0.9.522020-05-27T05:12:51ZJohannes Rankejranke@uni-bremen.de2020-05-27T05:12:51Zurn:sha1:b5ee48a86e4b1d4c05aaadb80b44954e2e994ebcUse all cores per default, confint tolerance2020-05-26T16:52:01ZJohannes Rankejranke@uni-bremen.de2020-05-26T16:38:51Zurn:sha1:675a733fa2acc08daabb9b8b571c7d658f281f73
Also, use more intelligent starting values for the variance of the
random effects for saemix. While this does not appear to speed up
the convergence, it shows where this variance is greatly reduced
by using mixed-effects models as opposed to the separate independent
fits.
Update version number, better example formatting2020-05-14T16:47:38ZJohannes Rankejranke@uni-bremen.de2020-05-14T16:47:38Zurn:sha1:a1d7c14feadd175674b3cd8b5d7051bafba5bc3eAdd a parms method for mmkin objects2020-05-14T16:39:29ZJohannes Rankejranke@uni-bremen.de2020-05-14T16:39:29Zurn:sha1:808a679efb69ec6603db6642687d9e8ceb3b3453