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<title>mkin/docs/reference, branch v0.9.49.10</title>
<subtitle>Fitting kinetic models to chemical degradation data (also on github)</subtitle>
<id>https://cgit.jrwb.de/mkin/atom?h=v0.9.49.10</id>
<link rel='self' href='https://cgit.jrwb.de/mkin/atom?h=v0.9.49.10'/>
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<updated>2020-04-17T22:38:26Z</updated>
<entry>
<title>Avoid assignment to .GlobalEnv for CRAN</title>
<updated>2020-04-17T22:38:26Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-17T22:38:26Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=518a801a9a0f1aef36df1f201b6a3f0f3a84b779'/>
<id>urn:sha1:518a801a9a0f1aef36df1f201b6a3f0f3a84b779</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Adapt endpoint() to also work for nlme.mmkin objects</title>
<updated>2020-04-15T18:42:29Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-15T18:42:29Z</published>
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<id>urn:sha1:d518c4cfa22994db5ba81a6b01c6cb4c4186872e</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Include random effects in starting parameters</title>
<updated>2020-04-15T17:00:06Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-15T16:13:04Z</published>
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<id>urn:sha1:42171ba55222383a0d47e5aacd46a972819e7812</id>
<content type='text'>
- mean_degparms() now optionally returns starting values for fixed and
  random effects, which makes it possible to obtain acceptable fits
  also in more difficult cases (with more parameters)
- Fix the anova method, as it is currently not enough to inherit from
  lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761
- Show fit information, and per default also errmin information
  in plot.nlme.mmkin()
- Examples for nlme.mmkin: Decrease tolerance and increase the number of
  iterations in the PNLS step in order to be able to fit FOMC-SFO and
  DFOP-SFO
</content>
</entry>
<entry>
<title>A plot method for nlme.mmkin fits</title>
<updated>2020-04-14T23:51:55Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-14T23:27:02Z</published>
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<id>urn:sha1:082be7baa35d7e8131a70ca8cc061d90e08fa584</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Keep order of datasets in nlme_data, add a plot</title>
<updated>2020-04-14T09:58:35Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-14T09:45:49Z</published>
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<id>urn:sha1:d4a49b4837de347d34b2c198de7342c34b0fab63</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Improve nlme function docs</title>
<updated>2020-04-10T06:26:44Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-10T06:26:44Z</published>
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<id>urn:sha1:7777ff3b019e54364947ff393e2dab782d7cfe3c</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Static documentation rebuilt by pkgdown</title>
<updated>2020-04-04T15:20:06Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-04T14:50:20Z</published>
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<id>urn:sha1:a98733db782ce3e9446dda187c34703f61916806</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Compiled models article, reduce distractions</title>
<updated>2020-04-03T08:53:07Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-04-02T08:58:34Z</published>
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<id>urn:sha1:47ba9ea512b82fb8b31da8ec5558f3c0952d86d4</id>
<content type='text'>
- Added a section with platform specific notes on getting compiled
models to work to the compiled models article
- Don't return empty SFORB parameter list from endpoints() if there is no
SFORB model
- Avoid warnings when using standardized = TRUE in plot.mmkin()
</content>
</entry>
<entry>
<title>Use inline documentation for R6 class mkinds</title>
<updated>2020-03-31T08:31:16Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-03-31T07:52:19Z</published>
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<id>urn:sha1:64a476750ff57f4c612620bd58cc4ac42812e185</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Static documentation rebuilt by pkgdown</title>
<updated>2020-03-30T19:43:10Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2020-03-30T19:43:10Z</published>
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<id>urn:sha1:575fcacaa33076de97f41a79afb37efb97ca82e0</id>
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