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<title>mkin/docs/reference, branch v1.1.1</title>
<subtitle>Fitting kinetic models to chemical degradation data (also on github)</subtitle>
<id>https://cgit.jrwb.de/mkin/atom?h=v1.1.1</id>
<link rel='self' href='https://cgit.jrwb.de/mkin/atom?h=v1.1.1'/>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/'/>
<updated>2022-07-08T15:39:44Z</updated>
<entry>
<title>Store DLL info in mkinmod objects for performance</title>
<updated>2022-07-08T15:39:44Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-07-08T15:39:44Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=f35e0b3d3b9f41bee2f5cc357afcb69e3aadad15'/>
<id>urn:sha1:f35e0b3d3b9f41bee2f5cc357afcb69e3aadad15</id>
<content type='text'>
Thanks to Tomas Kalibera for his analysis of the problem on the
r-package-devel mailing list and for the suggestion on how to
fix it. See the current benchmark vignette for the new data
on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
</content>
</entry>
<entry>
<title>Add R version to data in benchmark vignette</title>
<updated>2022-07-01T07:08:49Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-07-01T07:08:49Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=7008a4ee100830a29a923a05274fd4ca216cd1ea'/>
<id>urn:sha1:7008a4ee100830a29a923a05274fd4ca216cd1ea</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Merge branch 'dmta_vignette'</title>
<updated>2022-06-30T08:41:47Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-06-30T08:41:47Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=e271d3e89bbb1cdd048ae14786911bf64d09f94d'/>
<id>urn:sha1:e271d3e89bbb1cdd048ae14786911bf64d09f94d</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Remove stray sentence from vignette, update docs</title>
<updated>2022-06-30T08:29:05Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-06-30T08:29:05Z</published>
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<id>urn:sha1:5a21dc4016b0208264e22e6a7e36af62397c13b6</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Remove outdated comment in FOCUS L vignette, update docs</title>
<updated>2022-05-18T19:26:17Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-05-18T19:26:17Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=91c5db736a4d3f2290a0cc5698fb4e35ae7bda59'/>
<id>urn:sha1:91c5db736a4d3f2290a0cc5698fb4e35ae7bda59</id>
<content type='text'>
This also adds the first benchmark results obtained on my laptop system
</content>
</entry>
<entry>
<title>Update static docs</title>
<updated>2022-04-11T06:53:38Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-04-11T06:53:38Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=6e559ef8680053873a8da51a000f6c2f2d28d719'/>
<id>urn:sha1:6e559ef8680053873a8da51a000f6c2f2d28d719</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Use saemix in help page, typo in vignette</title>
<updated>2022-03-16T13:42:30Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-03-16T13:42:30Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=e48c1f2ef990a622722e416c8d301430db4f5081'/>
<id>urn:sha1:e48c1f2ef990a622722e416c8d301430db4f5081</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Reduce check time for CRAN, release</title>
<updated>2022-03-14T14:41:56Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-03-14T14:41:56Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=3cddc58e6fcdd5341b354dc5b5f784ec8190f62b'/>
<id>urn:sha1:3cddc58e6fcdd5341b354dc5b5f784ec8190f62b</id>
<content type='text'>
</content>
</entry>
<entry>
<title>Remove nlmixr interface for release of mkin 1.1.0</title>
<updated>2022-03-07T13:55:21Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-03-07T11:03:40Z</published>
<link rel='alternate' type='text/html' href='https://cgit.jrwb.de/mkin/commit/?id=7035cde3a53781721fe15a8893fdf328c789bdd2'/>
<id>urn:sha1:7035cde3a53781721fe15a8893fdf328c789bdd2</id>
<content type='text'>
I am postponing my attempts to get the nlmixr interface to CRAN, given
some problems with nlmixr using R-devel under Windows, see
https://github.com/nlmixrdevelopment/nlmixr/issues/596
and
https://github.com/r-hub/rhub/issues/512,
which is fixed by the removal of nlmixr from the testsuite.

For the tests to be more platform independent, the biphasic mixed
effects models test dataset was defined in a way that fitting
should be more robust (less ill-defined).
</content>
</entry>
<entry>
<title>Update link to 2,4-D data</title>
<updated>2022-03-03T10:28:02Z</updated>
<author>
<name>Johannes Ranke</name>
<email>jranke@uni-bremen.de</email>
</author>
<published>2022-03-03T10:28:02Z</published>
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<id>urn:sha1:e94046786672eec082a287dc784052ee2d760d58</id>
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