mkin/inst/dataset_generation, branch devFitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=dev2022-11-18T18:14:47ZMake mixed model test data permanent to ensure reproducibility2022-11-18T18:14:47ZJohannes Rankejranke@uni-bremen.de2022-11-18T18:14:47Zurn:sha1:5364f037a72863ef5ba81e14ba4417f68fd389f9
To ensure that tests on different platforms work on the same data, the
mixed modelling test data previosly generated in
tests/testthat/setup_script.R were generated once using the script in
inst/dataset/generation/ds_mixed.R, and are now distributed with the
package.
Correction of the dimethenamid dataset2021-09-15T09:22:36ZJohannes Rankejranke@uni-bremen.de2021-09-15T09:22:36Zurn:sha1:35eaf4f7bac89b249ff488e4e3021d4226ed9e23
The data given in previous mkin versions for "Borstel 2" (Staudenmaier
2013) are in fact a subset of the "Borstel 1" data, with the "Borstel 2"
data simply being further analysed for isomer composition by
Staudenmaier (2013).
While correcting this, the URL of the RAR published by EFSA was
updated, as the EFSA Register of Questions was replaced by the
Open EFSA portal.
This also affects the recent publication in "Environments" [1], where
these two datasets were pooled. However, the influence on the final
results can be expected to be minimal. Out of the 16 observations for
the Borstel soil, five were erroneously duplicated which just changes
the weight of the different sampling points and modifies the variance.
The conclusions of the publication are qualitative and are not
considered to be affected.
[1] https://doi.org/10.3390/environments8080071
Dimethenamid data, normalisation options2020-12-19T11:23:08ZJohannes Rankejranke@uni-bremen.de2020-12-19T11:23:08Zurn:sha1:e25f0194736a090914c10a9f374946c0b89adc5bFixes for f_time_norm_focus, still very fragile...2020-11-13T15:49:13ZJohannes Rankejranke@uni-bremen.de2020-11-13T15:32:18Zurn:sha1:572e435b2394ef7092a78d0eebbbeda88b66a0a8Use preprocessed data for 2,4-D, update docs2020-11-12T10:57:37ZJohannes Rankejranke@uni-bremen.de2020-11-12T10:57:37Zurn:sha1:d1a94f2bb3742f50f3dd98a03d5fec338dd0cf65mkindsg class to hold groups of datasets2020-11-12T10:11:03ZJohannes Rankejranke@uni-bremen.de2020-11-12T10:04:45Zurn:sha1:7b807680b66269ff911df137f56e26775d84e283
- D24_2014 dataset on aerobic soil degradation of 2,4-D from the EU
assessment as mkindsg object with metadata
- f_time_norm_focus() to do time-step normalisation using the FOCUS
method
- focus_soil_moisture data with default moisture contents at pF1,
pF 2 and pF 2.5 for USDA soil types from FOCUS GW guidance
- Dataset generation scripts in inst/dataset_generation
- Depend on R >= 2.15.1 in order to facilitate the use of
utils::globalVariables()