mkin/inst/unitTests, branch v1.0.5 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v1.0.5 2015-05-13T22:21:47Z Start of migration from RUnit to testthat 2015-05-13T22:21:47Z Johannes Ranke jranke@uni-bremen.de 2015-05-13T22:21:12Z urn:sha1:01c69fcff8c5a82b4c80faaeb44ff00827e792ca Bug fix and unit tests for mkinerrmin 2014-08-25T08:39:40Z Johannes Ranke jranke@uni-bremen.de 2014-08-25T08:39:40Z urn:sha1:f30472ecd2afea6bd2153b8ad2bb2f663f3a2742 See NEWS.md for details Support formation fractions without sink pathway, updates 2014-07-01T22:25:00Z Johannes Ranke jranke@uni-bremen.de 2014-07-01T21:23:52Z urn:sha1:71d43b104999d7aee96d35ff2a9006f739d2df60 Calculate additional DT50 values for non-SFO models 2014-06-26T09:36:02Z Johannes Ranke jranke@uni-bremen.de 2014-06-26T09:36:02Z urn:sha1:a7e6b9f9a0ba46f84929603296d3dd4a0cbe4787 Format of gmkin workspace files, copyright, updates 2014-02-27T15:36:11Z Johannes Ranke jranke@uni-bremen.de 2014-02-27T15:36:11Z urn:sha1:6910e67398dbcb548dae179d361cb24404ad75a4 - Change the format of the workspace files of gmkin so they can be distributed in the mkin package - Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - Restrict the unit test with the Schaefer data to parent and primary metabolites as formation fraction and DT50 for A2 are higly correlated and passing the test is platform dependent. For example, the test fails in 1 out of 14 platforms on CRAN as of today - Add Eurofins Regulatory AG copyright notices - Import FME and deSolve instead of depending on them to have cleaner startup - Add a simple makefile 2013-11-11T20:22:40Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2013-11-11T20:22:40Z urn:sha1:4091cfd04c58cdd106b7c48c8b9a51e9179f4875 - Add a .Rbuildignore file - Clean up unit tests a bit - Test the gwidgets notebook from the knitr demo git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@150 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Now the eigenvalue based solution for FOCUS 2006 D works flawlessly with 2013-11-04T20:41:35Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2013-11-04T20:41:35Z urn:sha1:5aed88cadfd98defe12ffebd27ff5d199cc34edd default starting parameters - Took out a relatively long-lasting test that did not say much git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@136 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Update the TODO list, setting some requirements for version 1.0 2013-04-14T12:42:06Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2013-04-14T12:42:06Z urn:sha1:6168089ac43664c10ca2dc1281c8648fbf3b35a9 - Check that initial values specified using parms.ini are actually needed for the model, stop otherwise - List all formation fractions in the same place in the summary, also if they were fitted in the model - Include an FOMC model coupled to two metabolites in the unit tests - Some updates needed because of the above - Update of static documentation including the vignettes - Update of the mkin vignettes in the vignettes directory git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@82 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Completion of the multicompartment part of the mkin examples vignette 2013-02-18T22:11:49Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2013-02-18T22:11:49Z urn:sha1:fa10b85d6bb964742d2c5a3e3f633a5238c43d56 - Fix to chi2 error level calculation by correctly returning backtransformed parameters as bparms.optim and bparms.fixed - Adaptations of unit tests, summary and plot functions git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@67 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Document endpoints() function 2012-06-25T23:45:39Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2012-06-25T23:45:39Z urn:sha1:5f72a28432c024ab9d57b70e87186dcc607c0903 - Fix unit tests that were broken by introduction of the endpoints function - Small documentation fixes - Format output of backtransformed parameters - Integrate snippet for making static documentation using staticdocs by Hadley Wickham git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@41 edb9625f-4e0d-4859-8d74-9fd3b1da38cb