mkin/log, branch v1.2.5Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.2.52023-08-09T15:59:42ZUpdate static docs2023-08-09T15:59:42ZJohannes Rankejranke@uni-bremen.de2023-08-09T15:59:42Zurn:sha1:9abab1e2d4385039b01ad3dc0d9c5966bbe94feeDon't install saemix 3.2 from github any more2023-08-09T14:03:44ZRanke Johannesjohannes.ranke@agroscope.admin.ch2023-08-09T14:03:44Zurn:sha1:bd13f94b35e325da350a247c88b249dba62fe22f
Emmanuelle has made an official release to CRAN in June
Update docs, check and test on RStudio server2023-08-08T14:56:59ZRanke Johannesjohannes.ranke@agroscope.admin.ch2023-08-08T14:56:59Zurn:sha1:71d2f67189eaaad9b8d61d0f5c709f8d7be65a68Mesotrione data and vignette2023-08-04T11:27:41ZJohannes Rankejranke@uni-bremen.de2023-08-04T11:27:41Zurn:sha1:804a5cb47fcdc823d41c585729ace151b283ca65
The vignette illustrates pH dependent degradation (covariate modelling)
with some detail for the parent compound.
Also, a bug in the saem method of the illparms function was fixed, which
prevented to find ill-defined parameters in cases where e.g. slopes of
covariate models have a negative estimate.
Prepare release of v1.2.42023-05-19T15:10:16ZJohannes Rankejranke@uni-bremen.de2023-05-19T15:08:43Zurn:sha1:cf54ccca37d27480dbf8d59eb027300518f7ad75
- Update DESCRIPTION
- Update Makefile to document how to use R-patched
- Remove markup from two URLs to avoid CRAN NOTE
- Switch two vignettes from html_document to html_vignette to save space
in the docs directory, also avoiding a CRAN NOTE
- Complete rebuild of pkgdown docs for release
Skip the Eigenvalue based saem test2023-04-16T04:22:11ZJohannes Rankejranke@uni-bremen.de2023-04-16T04:19:00Zurn:sha1:76bc0fead33a63168a5e8d77a6c4b82426815d70
It took too long, and this solution method is not recommended. We are
saving 140 seconds here on my system, so more time is saved on travis.
Increase test coverage2023-04-15T18:00:00ZJohannes Rankejranke@uni-bremen.de2023-04-15T18:00:00Zurn:sha1:f215080efba4097ccdaa2d1208edd36c26d7978a
Also, using mkin analytical solutions for more than one observed
variable is not supported (but could be if out_values would be
reordered).
Make predefined symbols safer2023-04-15T13:35:06ZJohannes Rankejranke@uni-bremen.de2023-04-15T13:35:06Zurn:sha1:b0b710ee9f9bb9bbe9708676d0c5822465e02203
We still need to create a parallel processing cluster _after_ creating a
compiled model that is moved to a user defined location, at least I did
not find another way to make it work. This is not a problem with
parallel processing without a cluster, which is not available on
Windows.
Fix a bug with moved DLLs and current deSolve2023-04-06T06:06:34ZJohannes Rankejranke@uni-bremen.de2023-04-06T06:06:34Zurn:sha1:43d15fe2c2ecc570ad5edfba0e75ae9b22ac2080
In mkinmod, dll_info was not included in the returned model object
in the case that the DLL was moved to a user defined directory.
This is now fixed.
Deal with covariates in summary for saem.mmkin objects2023-04-02T14:58:56ZJohannes Rankejranke@uni-bremen.de2023-04-02T14:58:56Zurn:sha1:0311f0658a276fab84e78c060b73c0b46c33b100