mkin/man, branch v0.9-36 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v0.9-36 2015-06-20T16:38:03Z Reorganize transform_odeparms example, reduce check time 2015-06-20T16:38:03Z Johannes Ranke jranke@uni-bremen.de 2015-06-20T16:38:03Z urn:sha1:f0da2e311eb33fa5851956e958e91c25b4da5c1e Low-level generation of compiled models 2015-06-20T01:59:56Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T23:06:24Z urn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644 As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. Make the examples that are run more quiet 2015-06-05T11:40:02Z Johannes Ranke jranke@uni-bremen.de 2015-06-05T11:40:02Z urn:sha1:2bab93a12caf947387ce34c5a96bba942b2ee317 Include output in README, use mkinsub() in example code 2015-05-19T08:46:30Z Johannes Ranke jranke@uni-bremen.de 2015-05-19T08:46:30Z urn:sha1:e338c9a5a8da42e5f7b8940b96d150752767d75a Make checking faster, testing is done by tests 2015-05-18T14:58:44Z Johannes Ranke jranke@uni-bremen.de 2015-05-18T14:58:44Z urn:sha1:d337a9665d9261d18734d81edc8fe4b569635e71 Merge branch 'master' into compile_odes 2015-05-15T20:00:21Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T20:00:21Z urn:sha1:4cc0da3b67ec78534271eaef23ff2b13abfb86d9 Reduce time to run mkinfit example 2015-05-15T19:59:55Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T19:59:55Z urn:sha1:b952bc79603b1095c28e088b372990121d595113 Make mkinmod quiet in tests 2015-05-15T12:04:49Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T12:04:49Z urn:sha1:ffc12f79fdb283bc59f073208c883b84271be121 Merge branch 'master' into compile_odes 2015-05-15T11:55:19Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T11:55:19Z urn:sha1:6c65cba39dbca98caf3f8e69552b3454ec1721fc Conflicts (resolved manually, deleting code that I had integrated into the RUnit tests for testing the compiled version): .gitignore DESCRIPTION inst/unitTests/runit.mkinerrmin.R inst/unitTests/runit.mkinfit.R tests/testthat/test_mkinpredict_SFO_SFO.R vignettes/FOCUS_L.html Add synthetic data generated for UBA expertise, tests 2015-05-15T11:04:36Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T11:04:36Z urn:sha1:9a5d2378845e584a2a2c6c09f7ef99a82d09273b The new tests are based on the results documented in the expertise I wrote for the UBA (currently unpublished).