mkin/man, branch v1.1.1 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v1.1.1 2022-05-18T19:26:17Z Remove outdated comment in FOCUS L vignette, update docs 2022-05-18T19:26:17Z Johannes Ranke jranke@uni-bremen.de 2022-05-18T19:26:17Z urn:sha1:91c5db736a4d3f2290a0cc5698fb4e35ae7bda59 This also adds the first benchmark results obtained on my laptop system More control of y axes in plot.mkinfit, updates 2022-04-13T09:11:02Z Johannes Ranke jranke@uni-bremen.de 2022-04-12T12:41:07Z urn:sha1:ea57db98cef3fb882f7bd9656b44f270e7bded38 Documentation and test results were updated, the latter with regard to the previous work on plot.mixed.mmkin. Improvements to mean_degparms() and plot.mixed.mmkin() 2022-04-09T04:21:23Z Johannes Ranke jranke@uni-bremen.de 2022-04-09T04:21:23Z urn:sha1:c29e27b9bf5f5361db44e28b06da7b8a1e636e85 - New argument 'default_log_parms' for mean_degparms() - 'plot.mixed.mmkin': Pass the frame argument also to residual plots, take the 'default_log_parms' argument for 'mean_degparms' used for constructing approximate population curves, plot population curve last to avoid that it is covered by data Improvements to CAKE_export() 2022-03-19T04:51:10Z Johannes Ranke jranke@uni-bremen.de 2022-03-19T04:51:10Z urn:sha1:d03a6abad27d6eef13dceb64f31b1278bb816c00 Use saemix in help page, typo in vignette 2022-03-16T13:42:30Z Johannes Ranke jranke@uni-bremen.de 2022-03-16T13:42:30Z urn:sha1:e48c1f2ef990a622722e416c8d301430db4f5081 Reduce check time for CRAN, release 2022-03-14T14:41:56Z Johannes Ranke jranke@uni-bremen.de 2022-03-14T14:41:56Z urn:sha1:3cddc58e6fcdd5341b354dc5b5f784ec8190f62b Remove nlmixr interface for release of mkin 1.1.0 2022-03-07T13:55:21Z Johannes Ranke jranke@uni-bremen.de 2022-03-07T11:03:40Z urn:sha1:7035cde3a53781721fe15a8893fdf328c789bdd2 I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined). Update link to 2,4-D data 2022-03-03T10:28:02Z Johannes Ranke jranke@uni-bremen.de 2022-03-03T10:28:02Z urn:sha1:e94046786672eec082a287dc784052ee2d760d58 Make tests more platform independent, update docs 2022-03-02T17:03:54Z Johannes Ranke jranke@uni-bremen.de 2022-03-02T17:03:54Z urn:sha1:2bb59c88d49b193f278916ad9cc4de83c0de9604 Fix nlmixr fits with parallel metabolites 2022-03-02T12:11:49Z Johannes Ranke jranke@uni-bremen.de 2022-03-02T12:11:49Z urn:sha1:351248d07f810ccb6c497633a02cd48ee35526e6