mkin/tests/testthat, branch nlmixr Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=nlmixr 2021-11-17T11:59:49Z Update required saemix version, update tests 2021-11-17T11:59:49Z Johannes Ranke jranke@uni-bremen.de 2021-11-17T11:59:49Z urn:sha1:d75378911cef79b3ed95daef71bf67db413d2ac8 Merge branch 'master' into nlmixr 2021-09-16T06:23:57Z Johannes Ranke jranke@uni-bremen.de 2021-09-16T06:23:57Z urn:sha1:212070667de33e4d4adc7f0ae7baf8e18ad51d3f Update test result to corrected data, version bump 2021-09-15T13:30:02Z Johannes Ranke jranke@uni-bremen.de 2021-09-15T13:30:02Z urn:sha1:fab885edd66b6a1d2e660ee6aa70d14474330697 Merge branch 'master' into nlmixr 2021-07-23T16:13:14Z Johannes Ranke jranke@uni-bremen.de 2021-07-23T16:13:14Z urn:sha1:36b67cc7505a0a7f0960d4cb820c527f27e18f9c After the merge, run make test and accept the new snapshot for the mixed model fit for an nlme object Update vdiffr tests for version 1.0 2021-07-23T13:33:56Z Johannes Ranke jranke@uni-bremen.de 2021-07-23T13:33:56Z urn:sha1:24c504bb5d4d202661de5e36e6d80f2b8e906ff8 Let backtransform_odeparms handle nlmixr formation fractions 2021-06-17T11:58:34Z Johannes Ranke jranke@uni-bremen.de 2021-06-17T11:58:34Z urn:sha1:05baf3bf92cba127fd2319b779db78be86170e5e Also adapt summary.nlmixr.mmkin to correctly handle the way formation fractions are translated to nlmixr Translate formation fractions to nlmixr language 2021-06-16T16:03:22Z Johannes Ranke jranke@uni-bremen.de 2021-06-16T16:03:22Z urn:sha1:28197d5fcbaf85b39f4c032b8180d68b6f6a01b3 Works for the dimethenamid data, at least for FOCEI. Very little testing yet. The summary function does not yet handle the new transformations of formation fractions (that are in fact very old, as they were used in the very first version of mkin). The test file has no tests yet, just some code that may be used for testing. Small cosmetics 2021-06-12T09:05:24Z Johannes Ranke jranke@uni-bremen.de 2021-06-12T09:05:24Z urn:sha1:88cf130615a6cde0c4e65d14db32fed7f6e43085 Some improvements for borderline cases 2021-03-09T16:35:47Z Johannes Ranke jranke@uni-bremen.de 2021-03-09T16:35:47Z urn:sha1:c73b2f30ec836c949885784ab576e814eb8070a9 - fit_with_errors for saem() - test_log_parms for mean_degparms() and saem() Reintroduce interface to saemix 2021-02-06T17:30:32Z Johannes Ranke jranke@uni-bremen.de 2021-02-06T17:30:32Z urn:sha1:48c463680b51fa767b4cd7bd62865f192d0354ac Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.