mkin/tests/testthat, branch v1.1.1 Fitting kinetic models to chemical degradation data (also on github) https://cgit.jrwb.de/mkin/atom?h=v1.1.1 2022-07-12T12:44:55Z Tests before release 2022-07-12T12:44:55Z Johannes Ranke jranke@uni-bremen.de 2022-07-12T12:44:55Z urn:sha1:ab502a6aeacda7c70abe52b8c16e2a15f592a6ed Avoid spawning multiple cores in tests on CRAN 2022-07-12T12:07:55Z Johannes Ranke jranke@uni-bremen.de 2022-07-12T12:07:55Z urn:sha1:ac88a2fd793288d1d99046d32400974db82d85ea Store DLL info in mkinmod objects for performance 2022-07-08T15:39:44Z Johannes Ranke jranke@uni-bremen.de 2022-07-08T15:39:44Z urn:sha1:f35e0b3d3b9f41bee2f5cc357afcb69e3aadad15 Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance. More control of y axes in plot.mkinfit, updates 2022-04-13T09:11:02Z Johannes Ranke jranke@uni-bremen.de 2022-04-12T12:41:07Z urn:sha1:ea57db98cef3fb882f7bd9656b44f270e7bded38 Documentation and test results were updated, the latter with regard to the previous work on plot.mixed.mmkin. Test saemix without special analytical solutions 2022-03-19T09:42:07Z Johannes Ranke jranke@uni-bremen.de 2022-03-19T09:42:07Z urn:sha1:2728910b96f0ec7dd7ccd97fc6c1f6677e5e352d Also increase the performance a bit (from about 210 s to about 140 s in the case of DFOP with four chains and 300, 100 iterations). Improvements to CAKE_export() 2022-03-19T04:51:10Z Johannes Ranke jranke@uni-bremen.de 2022-03-19T04:51:10Z urn:sha1:d03a6abad27d6eef13dceb64f31b1278bb816c00 Reduce check time for CRAN, release 2022-03-14T14:41:56Z Johannes Ranke jranke@uni-bremen.de 2022-03-14T14:41:56Z urn:sha1:3cddc58e6fcdd5341b354dc5b5f784ec8190f62b Avoid using multiple processes on CRAN check machines 2022-03-08T10:45:42Z Johannes Ranke jranke@uni-bremen.de 2022-03-08T04:37:49Z urn:sha1:48a532256cfe466f082c191956535045e85ea929 Remove nlmixr interface for release of mkin 1.1.0 2022-03-07T13:55:21Z Johannes Ranke jranke@uni-bremen.de 2022-03-07T11:03:40Z urn:sha1:7035cde3a53781721fe15a8893fdf328c789bdd2 I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined). Reintroduce the skipped test, with a workaround 2022-03-03T16:44:12Z Johannes Ranke jranke@uni-bremen.de 2022-03-03T16:44:12Z urn:sha1:77c248ca40b82ec00a756cd82f12968131f78959