mkin/vignettes/FOCUS_D.html, branch v0.9.49.6Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v0.9.49.62019-05-02T16:54:22ZRemove reference to archived kinfit package2019-05-02T16:54:22ZJohannes Rankejranke@uni-bremen.de2019-05-02T16:54:22Zurn:sha1:6ddb7575f37d9d534f014cbd105b2f07660d59c6
from vignettes/mkin.Rmd
Static documentation rebuilt by pkgdown
Direct error model fitting works2019-04-04T15:21:13ZJohannes Rankejranke@uni-bremen.de2019-04-04T13:42:23Zurn:sha1:7a1d3d031aa23fce723ac4f4c8e4bb5d64959447
- No IRLS required
- Removed optimization algorithms other than Port
- Removed the dependency on FME
- Fitting the error model 'obs' is much faster for the FOCUS_2006_D
dataset and the FOMC_SFO model (1 second versus 3.4 seconds)
- Vignettes build slower. Compiled models needs 3 minutes instead of 1.5
- For other vignettes, the trend is less clear. Some fits are faster,
even for error_model = "const". FOCUS_Z is faster (34.9 s versus
44.1 s)
- Standard errors and confidence intervals are slightly smaller
- Removed code for plotting during the fit, as I hardly ever used it
- Merged the two cost functions (using transformed and untransformed
parameters) into one log-likelihood function
Restore NAMESPACE2019-01-31T15:55:20ZJohannes Rankejranke@uni-bremen.de2019-01-31T15:55:20Zurn:sha1:3eefecf0adfbb30b8fb895c244dea6903bcb3e9c
which was accidentally overwritten by pkgdown -> roxygen
Correct references to the Rocke and Lorenzato model2018-07-18T13:58:46ZJohannes Rankejranke@uni-bremen.de2018-07-18T13:18:30Zurn:sha1:0b98c459c30a0629a728acf6b311de035c55fb64
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y.
Rebuild static documentation.
Load mkin quietly in vignettes2018-01-14T17:37:07ZJohannes Rankejranke@uni-bremen.de2018-01-14T17:37:07Zurn:sha1:373d98038c514c5152478127a8a2b9b390ee1b58
Static documentation articles rebuilt by pkgdown::build_articles()
Use html_vignette for FOCUS_D vignette, fix address2017-11-16T16:13:35ZJohannes Rankejranke@uni-bremen.de2017-11-16T16:13:35Zurn:sha1:1511ed0a775e15ec2158e22d08a4da00cdd834aa
Static documentation articles rebuilt by pkgdown::build_articles()
Fix another URL, vignette builder, rebuild2017-07-21T16:06:09ZJohannes Rankejranke@uni-bremen.de2017-07-21T16:05:21Zurn:sha1:092c6fdc8b8bbadd3724b4023de60b7f1fe1500fStatic docs except articles rebuilt with current pkgdown2017-05-05T10:46:31ZJohannes Rankejranke@uni-bremen.de2017-05-05T10:46:31Zurn:sha1:ccc70e82af4ba435f0a71ba1ae4e0e92045c3852Fix links in README, configure navbar, rebuild docs2016-11-18T22:08:45ZJohannes Rankejranke@uni-bremen.de2016-11-18T22:08:45Zurn:sha1:d852e9e000f57f280deb84611ae1af58daa883ccUse plot_sep in FOCUS D vignette2016-11-17T16:38:13ZJohannes Rankejranke@uni-bremen.de2016-11-17T16:38:13Zurn:sha1:38194642f58a798207663d469e8241265de95717