mkin/vignettes/web_only/benchmarks.html, branch v1.0.3Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.0.32021-02-15T14:20:53ZImprove README, introductory vignette and some other docs2021-02-15T14:20:53ZJohannes Rankejranke@uni-bremen.de2021-02-15T13:08:13Zurn:sha1:a9427a09abdf7ce9aaeae7c7190f90c8f2e5ef52
Also bump version to 1.0.3.
Further formatting improvement of benchmark vignette2020-05-13T14:20:23ZJohannes Rankejranke@uni-bremen.de2020-05-13T14:20:23Zurn:sha1:218a9c55bd80fb708b15fa7196422f759bfe4b27
Also, use .rmd extension instead of .Rmd for vignettes.
Improve formatting of benchmark vignette2020-05-12T15:48:07ZJohannes Rankejranke@uni-bremen.de2020-05-12T15:48:07Zurn:sha1:4eada5fff40493fad77726531e22dd6ad693a662Update vignettes and docs2020-05-12T14:34:00ZJohannes Rankejranke@uni-bremen.de2020-05-12T14:34:00Zurn:sha1:6211f3ef4995657798686d8d4ab43ed9406e8a08Avoid merge() and data.frame() in cost function2020-05-11T03:18:32ZJohannes Rankejranke@uni-bremen.de2020-05-11T03:15:19Zurn:sha1:234c9059a95e104917e488a6ddd2313234a96cdc
also for deSolve and eigenvalue based solutions. This noticeably increases
performance for these methods, see test.log and benchmark vignette.
Default to analytical for coupled models if available2020-05-10T19:53:00ZJohannes Rankejranke@uni-bremen.de2020-05-10T19:53:00Zurn:sha1:d113cd79b178fdc91aecb894707ed356129dfb75
This revealed that transforming rates is necessary for fitting
the analytical solution of the SFO-SFO model to the FOCUS D dataset.
Benchmarks show that fitting coupled models with deSolve got a bit
slower through the latest changes
Prepare for CRAN release2019-05-02T15:51:07ZJohannes Rankejranke@uni-bremen.de2019-05-02T15:07:55Zurn:sha1:a4ca3451f1b5c37d10c6a41cb18a99b1631e8aa2
- Skip long running tests on CRAN as well to avoid timeout on winbuilder
- Don't install benchmark results in the package, they are only needed
in the git repository
- Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder
- Rebuild docs
Adapt tests, vignettes and examples2019-04-10T08:17:35ZJohannes Rankejranke@uni-bremen.de2019-04-10T08:17:35Zurn:sha1:194659fcaccdd1ee37851725b8c72e99daa3a8cf
- Write the NEWS
- Static documentation rebuilt by pkgdown
- Adapt mkinerrmin
- Fix (hopefully all) remaining problems in mkinfit