mkin/vignettes/web_only/compiled_models.html, branch v0.9.49.11Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v0.9.49.112020-04-03T08:53:07ZCompiled models article, reduce distractions2020-04-03T08:53:07ZJohannes Rankejranke@uni-bremen.de2020-04-02T08:58:34Zurn:sha1:47ba9ea512b82fb8b31da8ec5558f3c0952d86d4
- Added a section with platform specific notes on getting compiled
models to work to the compiled models article
- Don't return empty SFORB parameter list from endpoints() if there is no
SFORB model
- Avoid warnings when using standardized = TRUE in plot.mmkin()
Direct error model fitting works2019-04-04T15:21:13ZJohannes Rankejranke@uni-bremen.de2019-04-04T13:42:23Zurn:sha1:7a1d3d031aa23fce723ac4f4c8e4bb5d64959447
- No IRLS required
- Removed optimization algorithms other than Port
- Removed the dependency on FME
- Fitting the error model 'obs' is much faster for the FOCUS_2006_D
dataset and the FOMC_SFO model (1 second versus 3.4 seconds)
- Vignettes build slower. Compiled models needs 3 minutes instead of 1.5
- For other vignettes, the trend is less clear. Some fits are faster,
even for error_model = "const". FOCUS_Z is faster (34.9 s versus
44.1 s)
- Standard errors and confidence intervals are slightly smaller
- Removed code for plotting during the fit, as I hardly ever used it
- Merged the two cost functions (using transformed and untransformed
parameters) into one log-likelihood function
Remove two vignettes from the package but not from docs2018-09-14T15:00:08ZJohannes Rankejranke@uni-bremen.de2018-09-14T14:57:17Zurn:sha1:70d158c4dd919f4f77bc12f8ace333d29d249b79
- Rebuild static documentation
- Adapt test to new approach to two component error model
where the model is inadequate