mkin/vignettes/web_only/dimethenamid_2018.html, branch v1.1.1Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.1.12022-07-01T11:52:52ZSensitivity of AIC values in DMTA vignette to BLAS version2022-07-01T11:52:52ZJohannes Rankejranke@uni-bremen.de2022-07-01T11:52:52Zurn:sha1:16a7ed9548b37fe3c68c993651226fdc2dda6402Remove outdated comment in FOCUS L vignette, update docs2022-05-18T19:26:17ZJohannes Rankejranke@uni-bremen.de2022-05-18T19:26:17Zurn:sha1:91c5db736a4d3f2290a0cc5698fb4e35ae7bda59
This also adds the first benchmark results obtained on my laptop system
Remove nlmixr interface for release of mkin 1.1.02022-03-07T13:55:21ZJohannes Rankejranke@uni-bremen.de2022-03-07T11:03:40Zurn:sha1:7035cde3a53781721fe15a8893fdf328c789bdd2
I am postponing my attempts to get the nlmixr interface to CRAN, given
some problems with nlmixr using R-devel under Windows, see
https://github.com/nlmixrdevelopment/nlmixr/issues/596
and
https://github.com/r-hub/rhub/issues/512,
which is fixed by the removal of nlmixr from the testsuite.
For the tests to be more platform independent, the biphasic mixed
effects models test dataset was defined in a way that fitting
should be more robust (less ill-defined).
Improve dimethenamid vignette2022-02-28T10:03:23ZJohannes Rankejranke@uni-bremen.de2022-02-28T10:03:23Zurn:sha1:6b7b93c29115d75bf10c63b61f565a61a2d74498Update the dimethenamid vignette with current saemix2022-01-11T18:28:22ZJohannes Rankejranke@uni-bremen.de2022-01-11T18:28:22Zurn:sha1:e7751e791f46b2aa334f52109e0bd8211dfd7083
Convergence is faster with this version (@ecomets mentioned that there
was a bugfix lately that could lead to faster convergence). However,
if I use too many iterations (i.e. 10 000 as in the last version of
this vignette), I get an error in solving omega.teta during later
iterations, apparently due to overparameterisation of the DFOP model
in this case.
intervals() methods, more DFOP/tc variants2021-09-27T18:10:01ZJohannes Rankejranke@uni-bremen.de2021-09-27T18:10:01Zurn:sha1:5c15ef747568b3a9a9c094b6aa546dc80e3aa87aPut the AIC comparison in a subsubsection2021-09-17T06:47:09ZJohannes Rankejranke@uni-bremen.de2021-09-17T06:47:09Zurn:sha1:047d048b89e167fb354b45cd7c6b719b9f4cdd28Adapt and improve the dimethenamid vignette2021-09-16T15:36:26ZJohannes Rankejranke@uni-bremen.de2021-09-16T13:31:13Zurn:sha1:c41381a961263c28d60976e68923157916c78b15
Adapt to the corrected data and unify control parameters for saemix and
nlmixr with saem. Update docs
Fix dimethenamid vignette problems and update docs2021-07-27T16:22:01ZJohannes Rankejranke@uni-bremen.de2021-07-27T16:22:01Zurn:sha1:0b754ffa91b9496bdd2f892cf3ca2bd887028deaSome example evaluations of dimethenamid data2021-07-23T11:55:34ZJohannes Rankejranke@uni-bremen.de2021-07-23T11:55:34Zurn:sha1:40b78bed232798ecbeb72759cdf8d400ea35b31f
Evaluations with nlme, saemix and nlmixr are included