mkin/vignettes/web_only, branch mainFitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=main2025-09-12T20:16:13ZFacilitate centering covariates2025-09-12T20:16:13ZJohannes Rankejohannes.ranke@jrwb.de2025-09-12T20:16:13Zurn:sha1:17af45b984d348505527140470c7fff204748ea6
The motivation for this is to obtain confidence intervals for
covariate dependent parameters that are valid for a median/mean
value of the covariate.
Implementation by adding an argument to the 'saem' function, and
adapting the relevant functions working with 'saem' objects.
Vignettes, the template and tests were updated to use the new functionality.
Fix link to mesotrione vignette in static docs2025-05-14T03:18:41ZJohannes Rankejohannes.ranke@jrwb.de2025-05-14T03:18:41Zurn:sha1:3ae975f6039da0edc3ae6298bcac388e7346e73fUpdate pkgdown site2025-05-13T18:01:06ZJohannes Rankejohannes.ranke@jrwb.de2025-05-13T18:01:06Zurn:sha1:9f10920bd2dc78012cfcd282fc1866dde8d26f9eMove prebuilt mesotrione vignette to web only2025-05-13T05:11:40ZJohannes Rankejohannes.ranke@jrwb.de2025-05-13T05:11:40Zurn:sha1:bd8611f611d33f34091e2b1e1dd5da2adf975602
This addresses the 5 MB tarball size restriction on CRAN.
Check and test locally2025-05-12T20:16:10ZJohannes Rankejohannes.ranke@jrwb.de2025-05-12T20:16:10Zurn:sha1:c58ccd73951b2000a7a254fb36bbd9f0733db6cdFix solution type "deSolve" for a special case2025-02-16T16:29:28ZJohannes Rankejohannes.ranke@jrwb.de2025-02-16T16:27:18Zurn:sha1:4f62f39b8979cb3a5c52d65d425e530dc0770665
The special case occurs if not observed data for time zero
are available. Fixes #16. Write NEWS and update docs.
A lot of html was regenerated, because I had checked out
the main branch in between, which made pkgdown believe that
I have changed the help files.
Initialize dev docs2025-02-14T08:15:20ZJohannes Rankejohannes.ranke@jrwb.de2025-02-14T08:15:20Zurn:sha1:91a5834dd701211f929fd25419dc34561ce3b4e7Axis legend formatting, update vignettes2025-02-13T18:20:04ZJohannes Rankejohannes.ranke@jrwb.de2025-02-13T15:30:31Zurn:sha1:6476f5f49b373cd4cf05f2e73389df83e437d597Update pkgdown docs to bootstrap 5 with search2023-11-16T05:02:05ZJohannes Rankejranke@uni-bremen.de2023-11-16T05:02:05Zurn:sha1:8b7edd4eaf0d196e674a085f744d1a69260a6c91Benchmarks on new CPU with current versions2023-11-02T13:43:06ZJohannes Rankejranke@uni-bremen.de2023-11-02T13:43:06Zurn:sha1:6ae6b5230efd2e3d25b68600bd988ded60d3db77