mkin/vignettes/web_only, branch nlmixrFitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=nlmixr2022-01-11T18:28:22ZUpdate the dimethenamid vignette with current saemix2022-01-11T18:28:22ZJohannes Rankejranke@uni-bremen.de2022-01-11T18:28:22Zurn:sha1:e7751e791f46b2aa334f52109e0bd8211dfd7083
Convergence is faster with this version (@ecomets mentioned that there
was a bugfix lately that could lead to faster convergence). However,
if I use too many iterations (i.e. 10 000 as in the last version of
this vignette), I get an error in solving omega.teta during later
iterations, apparently due to overparameterisation of the DFOP model
in this case.
intervals() methods, more DFOP/tc variants2021-09-27T18:10:01ZJohannes Rankejranke@uni-bremen.de2021-09-27T18:10:01Zurn:sha1:5c15ef747568b3a9a9c094b6aa546dc80e3aa87aPut the AIC comparison in a subsubsection2021-09-17T06:47:09ZJohannes Rankejranke@uni-bremen.de2021-09-17T06:47:09Zurn:sha1:047d048b89e167fb354b45cd7c6b719b9f4cdd28Adapt and improve the dimethenamid vignette2021-09-16T15:36:26ZJohannes Rankejranke@uni-bremen.de2021-09-16T13:31:13Zurn:sha1:c41381a961263c28d60976e68923157916c78b15
Adapt to the corrected data and unify control parameters for saemix and
nlmixr with saem. Update docs
Improve AIC table in vignette2021-08-04T14:37:52ZJohannes Rankejranke@uni-bremen.de2021-08-04T14:37:52Zurn:sha1:51fab94230e926cec690dc455964bd797a97b7c7Fix dimethenamid vignette problems and update docs2021-07-27T16:22:01ZJohannes Rankejranke@uni-bremen.de2021-07-27T16:22:01Zurn:sha1:0b754ffa91b9496bdd2f892cf3ca2bd887028deaMerge branch 'master' into nlmixr2021-07-23T16:13:14ZJohannes Rankejranke@uni-bremen.de2021-07-23T16:13:14Zurn:sha1:36b67cc7505a0a7f0960d4cb820c527f27e18f9c
After the merge, run make test and accept the new snapshot for the mixed
model fit for an nlme object
Some example evaluations of dimethenamid data2021-07-23T11:55:34ZJohannes Rankejranke@uni-bremen.de2021-07-23T11:55:34Zurn:sha1:40b78bed232798ecbeb72759cdf8d400ea35b31f
Evaluations with nlme, saemix and nlmixr are included
Bug fix in plot.mkinfit2021-03-31T17:42:17ZJohannes Rankejranke@uni-bremen.de2021-03-31T17:42:17Zurn:sha1:3a5463672c297b37c3c9135c8b144c48744c05d0
In residual plots, use xlab and xlim if appropriate
Correct grant numbers in README, update docs2021-02-15T16:53:45ZJohannes Rankejranke@uni-bremen.de2021-02-15T16:53:45Zurn:sha1:4e95a1fe67b5faa2c0df34786ae757ee297a760f