mkin/vignettes, branch v0.9.50.1Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v0.9.50.12020-05-11T03:18:32ZAvoid merge() and data.frame() in cost function2020-05-11T03:18:32ZJohannes Rankejranke@uni-bremen.de2020-05-11T03:15:19Zurn:sha1:234c9059a95e104917e488a6ddd2313234a96cdc
also for deSolve and eigenvalue based solutions. This noticeably increases
performance for these methods, see test.log and benchmark vignette.
Default to analytical for coupled models if available2020-05-10T19:53:00ZJohannes Rankejranke@uni-bremen.de2020-05-10T19:53:00Zurn:sha1:d113cd79b178fdc91aecb894707ed356129dfb75
This revealed that transforming rates is necessary for fitting
the analytical solution of the SFO-SFO model to the FOCUS D dataset.
Benchmarks show that fitting coupled models with deSolve got a bit
slower through the latest changes
Change implementation of analytical solutions2020-05-06T19:33:12ZJohannes Rankejranke@uni-bremen.de2020-05-06T19:33:12Zurn:sha1:1195dfc8bdbf7c131d6c6ec30fedbbe746af1bee
Preparing for symbolic solutions for more than one compound
Add three functions to facilitate the use of nlme2020-04-04T14:46:37ZJohannes Rankejranke@uni-bremen.de2020-04-04T14:46:37Zurn:sha1:68f5f5c17e3e1c3f9272b9b663a4d7380433b530Compiled models article, reduce distractions2020-04-03T08:53:07ZJohannes Rankejranke@uni-bremen.de2020-04-02T08:58:34Zurn:sha1:47ba9ea512b82fb8b31da8ec5558f3c0952d86d4
- Added a section with platform specific notes on getting compiled
models to work to the compiled models article
- Don't return empty SFORB parameter list from endpoints() if there is no
SFORB model
- Avoid warnings when using standardized = TRUE in plot.mmkin()
Fix bug in yesterdays release, add methods for BIC2019-11-01T11:19:03ZJohannes Rankejranke@uni-bremen.de2019-11-01T11:19:03Zurn:sha1:bbb74d4f60033899cd5cdd36aa70f157bc52209eStatic documentation rebuilt by pkgdown2019-09-19T10:43:04ZJohannes Rankejranke@uni-bremen.de2019-09-19T10:43:04Zurn:sha1:a7beb73cdfeed34525266d76f424375e1d069a48
Use lazy = TRUE in the pd target for generating pkgdown documentation
Static documentation rebuilt by pkgdown2019-09-18T16:30:21ZJohannes Rankejranke@uni-bremen.de2019-09-18T16:30:21Zurn:sha1:1c7b39f3c542de75a1ba685fec3c154bef8a3301
to check if the link to the pfm package is correctly generated by
pkgdown after preparing the pfm package docs accordingly
Add url: tag to _pkgdown.yml2019-09-18T16:01:23ZJohannes Rankejranke@uni-bremen.de2019-09-18T16:01:23Zurn:sha1:b2c75fa1f73167d3e3c9c7db1d561dd482090aab
Static documentation rebuilt by pkgdown
Further corrections of the twa vignette2019-09-18T11:23:23ZJohannes Rankejranke@uni-bremen.de2019-09-18T11:23:23Zurn:sha1:a401a9225d212ed4dc64e96765f04aaaf17cc8c1
Static documentation rebuilt by pkgdown