mkin/vignettes, branch v1.2.5Fitting kinetic models to chemical degradation data (also on github)https://cgit.jrwb.de/mkin/atom?h=v1.2.52023-08-08T13:52:30ZFix a logical error in the mesotrione vignette2023-08-08T13:52:30ZRanke Johannesjohannes.ranke@agroscope.admin.ch2023-08-08T13:39:08Zurn:sha1:ec04610fca09cedad7bc8c367ae6884a1bd7b7f6Mesotrione data and vignette2023-08-04T11:27:41ZJohannes Rankejranke@uni-bremen.de2023-08-04T11:27:41Zurn:sha1:804a5cb47fcdc823d41c585729ace151b283ca65
The vignette illustrates pH dependent degradation (covariate modelling)
with some detail for the parent compound.
Also, a bug in the saem method of the illparms function was fixed, which
prevented to find ill-defined parameters in cases where e.g. slopes of
covariate models have a negative estimate.
Prepare release of v1.2.42023-05-19T15:10:16ZJohannes Rankejranke@uni-bremen.de2023-05-19T15:08:43Zurn:sha1:cf54ccca37d27480dbf8d59eb027300518f7ad75
- Update DESCRIPTION
- Update Makefile to document how to use R-patched
- Remove markup from two URLs to avoid CRAN NOTE
- Switch two vignettes from html_document to html_vignette to save space
in the docs directory, also avoiding a CRAN NOTE
- Complete rebuild of pkgdown docs for release
Update vignettes in dev docs2023-04-20T19:40:08ZJohannes Rankejranke@uni-bremen.de2023-04-20T19:40:08Zurn:sha1:78d34a8918edcb91982a3886e4898a63898f52c3
After the post-release fixes to the release version online docs
Merge branch 'v1.2.3_pkgdown'2023-04-20T18:17:12ZJohannes Rankejranke@uni-bremen.de2023-04-20T18:17:12Zurn:sha1:7b7c4bf493ba15824ea43bed764661678b4aca03Fix and rebuild documentation, see NEWS2023-04-20T18:03:32ZJohannes Rankejranke@uni-bremen.de2023-04-20T17:53:28Zurn:sha1:9ae42bd20bc2543a94cf1581ba9820c2f9e3afbd
I had to fix the two pathway vignettes, as they did not work with
the released version any more. So they and the multistart vignette
which got some small fixes as well were rebuilt.
Complete rebuild of the online docs with the released version. The
documentation of the 'hierarchial_kinetics' format had to be fixed
as well.
Small changes to the multistart vignette2023-04-20T17:51:37ZJohannes Rankejranke@uni-bremen.de2023-04-20T17:51:37Zurn:sha1:ad0efc2d16a84c674307ad2df9d44153b44a9cf8
- Fix legend positions and y axis scaling
- Include two more variants in the model comparison at the end,
and fix the logic of the discussion
Post release changes to the docs2023-04-17T19:58:17ZJohannes Rankejranke@uni-bremen.de2023-04-17T19:53:49Zurn:sha1:ee8c8a53903de1a0f480060900b706022af091b6
The cyantraniliprole and dmta pathway vignettes were not working any
more with the latest changes in deSolve and mkin. All docs need a
rebuild.
Improve docs of multistart method2023-04-17T17:39:09ZJohannes Rankejranke@uni-bremen.de2023-04-17T17:39:09Zurn:sha1:004fce2520d6889d82226e21bc443426e81d93f2Complete rebuild of static docs2023-04-16T11:42:23ZJohannes Rankejranke@uni-bremen.de2023-04-16T11:42:23Zurn:sha1:34ec60f1b140d788880d84b70cb62b344f7d74b9