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  <h1>
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    <p>This is a convenience function to set up the lists used as arguments for 
  <code>mkinmod</code>.</p>
    

    <pre><span class='fu'>mkinsub</span>(<span class='no'>submodel</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>sink</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='fl'>NA</span>)</pre>
    
    <h2>Arguments</h2>
    <dl class="dl-horizontal">
      <dt>submodel</dt>
      <dd>
    Character vector of length one to specify the submodel type. See 
    <code>mkinmod</code> for the list of allowed submodel names.
  </dd>
      <dt>to</dt>
      <dd>
    Vector of the names of the state variable to which a transformation 
    shall be included in the model.
  </dd>
      <dt>sink</dt>
      <dd>
    Should a pathway to sink be included in the model in addition to the 
    pathways to other state variables?
  </dd>
      <dt>full_name</dt>
      <dd>
    An optional name to be used e.g. for plotting fits performed with the model.
    You can use non-ASCII characters here, but then your R code will not be
    portable, <em>i.e.</em> may produce unintended plot results on other
    operating systems or system configurations.
  </dd>
    </dl>
    
    <div class="Value">
      <h2>Value</h2>

      <p>A list for use with <code>mkinmod</code>.</p>
    </div>
    
    <h2 id="examples">Examples</h2>
    <pre class="examples"><div class='input'><span class='co'># One parent compound, one metabolite, both single first order.</span>
<span class='no'>SFO_SFO</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(
  <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"m1"</span>),
  <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output'><strong class='text-info'>Successfully compiled differential equation model from auto-generated C code.</strong></div><div class='input'>
<span class='co'># The same model using mkinsub</span>
<span class='no'>SFO_SFO.2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(
  <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>),
  <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output'><strong class='text-info'>Successfully compiled differential equation model from auto-generated C code.</strong></div><div class='input'>
<span class='co'># Now supplying full names</span>
<span class='no'>SFO_SFO.2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(
  <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='st'>"Test compound"</span>),
  <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='st'>"Metabolite M1"</span>))</div><div class='output'><strong class='text-info'>Successfully compiled differential equation model from auto-generated C code.</strong></div></pre>
  </div>
  <div class="col-md-3">
    <h2>Author</h2>
    
  Johannes Ranke

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