<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>
— mmkin • mkin</title>
<!-- jquery -->
<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script>
<!-- Bootstrap -->
<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
<!-- Font Awesome icons -->
<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
<!-- pkgdown -->
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
<!-- mathjax -->
<script src='https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
</head>
<body>
<div class="container template-reference-topic">
<header>
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="../index.html">mkin</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="../reference/index.html">Reference</a>
</li>
<li>
<a href="../articles/index.html">Articles</a>
</li>
<li>
<a href="../news/index.html">News</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
</header>
<div class="row">
<div class="col-md-9 contents">
<div class="page-header">
<h1>
</h1>
</div>
<p>This function calls <code><a href='mkinfit.html'>mkinfit</a></code> on all combinations of models and datasets
specified in its first two arguments.</p>
<pre><span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>,
<span class='kw'>cores</span> <span class='kw'>=</span> <span class='fu'>round</span>(<span class='fu'>detectCores</span>()/<span class='fl'>2</span>), <span class='kw'>cluster</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='no'>...</span>)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
<dl class="dl-horizontal">
<dt>models</dt>
<dd>
Either a character vector of shorthand names ("SFO", "FOMC", "DFOP",
"HS", "SFORB"), or an optionally named list of <code><a href='mkinmod.html'>mkinmod</a></code>
objects.
</dd>
<dt>datasets</dt>
<dd>
An optionally named list of datasets suitable as observed data for
<code><a href='mkinfit.html'>mkinfit</a></code>.
</dd>
<dt>cores</dt>
<dd>
The number of cores to be used for multicore processing. This is only
used when the <code>cluster</code> argument is <code>NULL</code>.
</dd>
<dt>cluster</dt>
<dd>
A cluster as returned by <code>makeCluster</code> to be used for parallel
execution.
</dd>
<dt>&#8230;</dt>
<dd>
Further arguments that will be passed to <code><a href='mkinfit.html'>mkinfit</a></code>.
</dd>
</dl>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>A matrix of <code><a href='mkinfit.html'>mkinfit</a></code> objects that can be indexed using the model
and dataset names as row and column indices.</p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<p><code><a href='[.mmkin.html'>[.mmkin</a></code> for subsetting, <code><a href='plot.mmkin.html'>plot.mmkin</a></code> for plotting.</p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'><span class='co'>## Not run: ------------------------------------</span>
<span class='co'># m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"),</span>
<span class='co'># M1 = mkinsub("SFO", "M2"),</span>
<span class='co'># M2 = mkinsub("SFO"), use_of_ff = "max")</span>
<span class='co'># </span>
<span class='co'># m_synth_FOMC_lin <- mkinmod(parent = mkinsub("FOMC", "M1"),</span>
<span class='co'># M1 = mkinsub("SFO", "M2"),</span>
<span class='co'># M2 = mkinsub("SFO"), use_of_ff = "max")</span>
<span class='co'># </span>
<span class='co'># models <- list(SFO_lin = m_synth_SFO_lin, FOMC_lin = m_synth_FOMC_lin)</span>
<span class='co'># datasets <- lapply(synthetic_data_for_UBA_2014[1:3], function(x) x$data)</span>
<span class='co'># names(datasets) <- paste("Dataset", 1:3)</span>
<span class='co'># </span>
<span class='co'># time_default <- system.time(fits.0 <- mmkin(models, datasets))</span>
<span class='co'># time_1 <- system.time(fits.1 <- mmkin(models, datasets, cores = 1))</span>
<span class='co'># </span>
<span class='co'># time_default</span>
<span class='co'># time_1</span>
<span class='co'># </span>
<span class='co'># endpoints(fits[["SFO_lin", 2]])</span>
<span class='co'># </span>
<span class='co'># # Plot.mkinfit handles rows or columns of mmkin result objects</span>
<span class='co'># plot(fits.0[1, ])</span>
<span class='co'># plot(fits.0[1, ], obs_var = c("M1", "M2"))</span>
<span class='co'># plot(fits.0[, 1])</span>
<span class='co'># # Use double brackets to extract a single mkinfit object, which will be plotted</span>
<span class='co'># # by plot.mkinfit</span>
<span class='co'># plot(fits.0[[1, 1]], sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE)</span>
<span class='co'># # Plotting with mmkin (single brackets, extracting an mmkin object) does not</span>
<span class='co'># # allow to plot the observed variables separately</span>
<span class='co'># plot(fits.0[1, 1])</span>
<span class='co'>## ---------------------------------------------</span></div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#arguments">Arguments</a></li>
<li><a href="#value">Value</a></li>
<li><a href="#see-also">See also</a></li>
<li><a href="#examples">Examples</a></li>
</ul>
<h2>Author</h2>
Johannes Ranke
</div>
</div>
<footer>
<div class="copyright">
<p>Developed by Johannes Ranke.</p>
</div>
<div class="pkgdown">
<p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
</div>
</footer>
</div>
</body>
</html>
