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<h1>Plot a fitted nonlinear mixed model obtained via an mmkin row object</h1>
<div class="hidden name"><code>plot.nlme.mmkin.Rd</code></div>
</div>
<div class="ref-description">
<p>Plot a fitted nonlinear mixed model obtained via an mmkin row object</p>
</div>
<pre class="usage"><span class='co'># S3 method for nlme.mmkin</span>
<span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(
<span class='no'>x</span>,
<span class='kw'>i</span> <span class='kw'>=</span> <span class='fl'>1</span>:<span class='fu'><a href='https://rdrr.io/r/base/nrow.html'>ncol</a></span>(<span class='no'>x</span>$<span class='no'>mmkin_orig</span>),
<span class='kw'>main</span> <span class='kw'>=</span> <span class='st'>"auto"</span>,
<span class='kw'>legends</span> <span class='kw'>=</span> <span class='fl'>1</span>,
<span class='kw'>resplot</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"time"</span>, <span class='st'>"errmod"</span>),
<span class='kw'>standardized</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
<span class='kw'>cex</span> <span class='kw'>=</span> <span class='fl'>0.7</span>,
<span class='kw'>rel.height.middle</span> <span class='kw'>=</span> <span class='fl'>0.9</span>,
<span class='kw'>ymax</span> <span class='kw'>=</span> <span class='st'>"auto"</span>,
<span class='no'>...</span>
)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>x</th>
<td><p>An object of class <code><a href='nlme.mmkin.html'>nlme.mmkin</a></code></p></td>
</tr>
<tr>
<th>i</th>
<td><p>A numeric index to select datasets for which to plot the nlme fit,
in case plots get too large</p></td>
</tr>
<tr>
<th>main</th>
<td><p>The main title placed on the outer margin of the plot.</p></td>
</tr>
<tr>
<th>legends</th>
<td><p>An index for the fits for which legends should be shown.</p></td>
</tr>
<tr>
<th>resplot</th>
<td><p>Should the residuals plotted against time, using
<code><a href='mkinresplot.html'>mkinresplot</a></code>, or as squared residuals against predicted
values, with the error model, using <code><a href='mkinerrplot.html'>mkinerrplot</a></code>.</p></td>
</tr>
<tr>
<th>standardized</th>
<td><p>Should the residuals be standardized? This option
is passed to <code><a href='mkinresplot.html'>mkinresplot</a></code>, it only takes effect if
`resplot = "time"`.</p></td>
</tr>
<tr>
<th>cex</th>
<td><p>Passed to the plot functions and <code><a href='https://rdrr.io/r/graphics/mtext.html'>mtext</a></code>.</p></td>
</tr>
<tr>
<th>rel.height.middle</th>
<td><p>The relative height of the middle plot, if more
than two rows of plots are shown.</p></td>
</tr>
<tr>
<th>ymax</th>
<td><p>Maximum y axis value for <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code>.</p></td>
</tr>
<tr>
<th>...</th>
<td><p>Further arguments passed to <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code> and
<code><a href='mkinresplot.html'>mkinresplot</a></code>.</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>The function is called for its side effect.</p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'><span class='no'>ds</span> <span class='kw'><-</span> <span class='fu'><a href='https://rdrr.io/r/base/lapply.html'>lapply</a></span>(<span class='no'>experimental_data_for_UBA_2019</span>[<span class='fl'>6</span>:<span class='fl'>10</span>],
<span class='kw'>function</span>(<span class='no'>x</span>) <span class='fu'><a href='https://rdrr.io/r/base/subset.html'>subset</a></span>(<span class='no'>x</span>$<span class='no'>data</span>[<span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"name"</span>, <span class='st'>"time"</span>, <span class='st'>"value"</span>)], <span class='no'>name</span> <span class='kw'>==</span> <span class='st'>"parent"</span>))
<span class='no'>f</span> <span class='kw'><-</span> <span class='fu'><a href='mmkin.html'>mmkin</a></span>(<span class='st'>"SFO"</span>, <span class='no'>ds</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>)
<span class='co'>#plot(f) # too many panels for pkgdown</span>
<span class='fu'><a href='https://rdrr.io/r/base/library.html'>library</a></span>(<span class='no'>nlme</span>)
<span class='no'>f_nlme</span> <span class='kw'><-</span> <span class='fu'><a href='https://rdrr.io/pkg/nlme/man/nlme.html'>nlme</a></span>(<span class='no'>f</span>)
<span class='co'>#plot(f_nlme) # too many panels for pkgdown</span>
<span class='fu'><a href='https://rdrr.io/r/graphics/plot.html'>plot</a></span>(<span class='no'>f_nlme</span>, <span class='fl'>1</span>:<span class='fl'>2</span>)</div><div class='img'><img src='plot.nlme.mmkin-1.png' alt='' width='700' height='433' /></div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#arguments">Arguments</a></li>
<li><a href="#value">Value</a></li>
<li><a href="#examples">Examples</a></li>
</ul>
<h2>Author</h2>
<p>Johannes Ranke</p>
</div>
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