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<title>Summary method for class "mkinfit" — summary.mkinfit • mkin</title>
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<meta property="og:description" content="Lists model equations, the summary as returned by summary.modFit,
the chi2 error levels calculated according to FOCUS guidance (2006) as far
as defined therein, and optionally the data, consisting of observed, predicted
and residual values." />
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<h1>Summary method for class "mkinfit"</h1>
<div class="hidden name"><code>summary.mkinfit.Rd</code></div>
</div>
<div class="ref-description">
<p>Lists model equations, the summary as returned by <code>summary.modFit</code>,
the chi2 error levels calculated according to FOCUS guidance (2006) as far
as defined therein, and optionally the data, consisting of observed, predicted
and residual values.</p>
</div>
<pre class="usage"><span class='co'># S3 method for mkinfit</span>
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>object</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>distimes</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>alpha</span> <span class='kw'>=</span> <span class='fl'>0.05</span>, <span class='no'>...</span>)
<span class='co'># S3 method for summary.mkinfit</span>
<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='no'>x</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/Extremes'>max</a></span>(<span class='fl'>3</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/options'>getOption</a></span>(<span class='st'>"digits"</span>) - <span class='fl'>3</span>), <span class='no'>...</span>)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>object</th>
<td><p>an object of class <code><a href='mkinfit.html'>mkinfit</a></code>.</p></td>
</tr>
<tr>
<th>x</th>
<td><p>an object of class <code>summary.mkinfit</code>.</p></td>
</tr>
<tr>
<th>data</th>
<td><p>logical, indicating whether the data should be included in the summary.</p></td>
</tr>
<tr>
<th>distimes</th>
<td><p>logical, indicating whether DT50 and DT90 values should be included.</p></td>
</tr>
<tr>
<th>alpha</th>
<td><p>error level for confidence interval estimation from t distribution</p></td>
</tr>
<tr>
<th>digits</th>
<td><p>Number of digits to use for printing</p></td>
</tr>
<tr>
<th>…</th>
<td><p>optional arguments passed to methods like <code>print</code>.</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>The summary function returns a list derived from
<code>summary.modFit</code>, with components, among others</p>
<dt>version, Rversion</dt><dd><p>The mkin and R versions used</p></dd>
<dt>date.fit, date.summary</dt><dd><p>The dates where the fit and the summary were produced</p></dd>
<dt>use_of_ff</dt><dd><p>Was maximum or minimum use made of formation fractions</p></dd>
<dt>residuals, residualVariance, sigma, modVariance, df</dt><dd><p>As in summary.modFit</p></dd>
<dt>cov.unscaled, cov.scaled, info, niter, stopmess, par</dt><dd><p>As in summary.modFit</p></dd>
<dt>bpar</dt><dd><p>Optimised and backtransformed parameters</p></dd>
<dt>diffs </dt><dd><p>The differential equations used in the model</p></dd>
<dt>data </dt><dd><p>The data (see Description above).</p></dd>
<dt>start </dt><dd><p>The starting values and bounds, if applicable, for optimised parameters.</p></dd>
<dt>fixed </dt><dd><p>The values of fixed parameters.</p></dd>
<dt>errmin </dt><dd><p>The chi2 error levels for each observed variable.</p></dd>
<dt>bparms.ode </dt><dd><p>All backtransformed ODE parameters, for use as starting parameters for
related models.</p></dd>
<dt>ff </dt><dd><p>The estimated formation fractions derived from the fitted model.</p></dd>
<dt>distimes </dt><dd><p>The DT50 and DT90 values for each observed variable.</p></dd>
<dt>SFORB</dt><dd><p>If applicable, eigenvalues of SFORB components of the model.</p></dd>
The print method is called for its side effect, i.e. printing the summary.
<h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
<p>FOCUS (2006) “Guidance Document on Estimating Persistence and
Degradation Kinetics from Environmental Fate Studies on Pesticides in EU
Registration” Report of the FOCUS Work Group on Degradation Kinetics,
EC Document Reference Sanco/10058/2005 version 2.0, 434 pp,
<a href='http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics'>http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>)), <span class='no'>FOCUS_2006_A</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))</div><div class='output co'>#> <span class='error'>Error in mkinfit(mkinmod(parent = mkinsub("SFO")), FOCUS_2006_A, quiet = TRUE): konnte Funktion "mkinfit" nicht finden</span></div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#arguments">Arguments</a></li>
<li><a href="#value">Value</a></li>
<li><a href="#references">References</a></li>
<li><a href="#examples">Examples</a></li>
</ul>
<h2>Author</h2>
<p>Johannes Ranke</p>
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